CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.3262s0014
(
Capsella grandiflora
)
HSF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00447 (HSF_DNA-bind)
IPR000232
Cagra.3262s0014
T243030_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HSFA4A
M06947_2.00
Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN
Dap-seq
OMalley et al.(2016)
HSF21_col_a
0.334
0.382
HSFB3
M06937_2.00
Arabidopsis thaliana
RRAANMWTCTAGAAV
BTTCTAGAWKNTTYY
Dap-seq
OMalley et al.(2016)
HSFB3_col_a
0.319
0.360
HSFB3
M06938_2.00
Arabidopsis thaliana
AABSTTCTAGAAN
NTTCTAGAASVTT
Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a
0.319
0.360
For this family, TFs with SR scores >
0.318
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.3262s0014.1.p
HSF
12
104
FHMRIYKVVEDPSSDPIISWGKDNNSFVIWNLEEFTRKNIVGNFNCSRFSEFRSELRYYGFRRIKKGSGELEYGNEDFVRGEPERLKTMMIKA
Links
Other
HSF
family TFs
Other
Capsella grandiflora
TFs
149 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10006026m.g
Capsella rubella
Carubv10006026m.g
I
0.606
Cagra.3262s0011
Capsella grandiflora
Cagra.3262s0011
I
0.603
Carubv10006025m.g
Capsella rubella
Carubv10006025m.g
I
0.603
Cagra.3262s0013
Capsella grandiflora
Cagra.3262s0013
I
0.573
scaffold_702446.1
Arabidopsis lyrata
scaffold_702446.1
N
0.530
Cagra.3262s0012
Capsella grandiflora
Cagra.3262s0012
I
0.416
Bra025611
Brassica rapa
Bra025611
N
0.413
scaffold_702441.1
Arabidopsis lyrata
scaffold_702441.1
I
0.411
AT4G19630
Arabidopsis thaliana
AT4G19630
N
0.408
scaffold_600621.1
Arabidopsis lyrata
scaffold_600621.1
I
0.396
Bostr.20129s0193
Boechera stricta
Bostr.20129s0193
I
0.392
Bra025606
Brassica rapa
Bra025606
I
0.389
Bo4g139630
Brassica oleracea
Bo4g139630
I
0.386
Bra025608
Brassica rapa
Bra025608
I
0.383
Bra025635
Brassica rapa
Bra025635
I
0.382
Bo4g139200
Brassica oleracea
Bo4g139200
I
0.379
Thhalv10026540m.g
Eutrema salsugineum
Thhalv10026540m.g
I
0.375
Bostr.30275s0431
Boechera stricta
Bostr.30275s0431
I
0.373
Bo4g139270
Brassica oleracea
Bo4g139270
N
0.373
Cagra.0096s0075
Capsella grandiflora
Cagra.0096s0075
I
0.366
Carubv10021131m.g
Capsella rubella
Carubv10021131m.g
I
0.366
Bra002882
Brassica rapa
Bra002882
I
0.365
Bostr.27895s0020
Boechera stricta
Bostr.27895s0020
N
0.364
Thhalv10028026m.g
Eutrema salsugineum
Thhalv10028026m.g
I
0.364
Al_scaffold_0003_3814
Arabidopsis lyrata
Al_scaffold_0003_3814
I
0.362
Thhalv10027510m.g
Eutrema salsugineum
Thhalv10027510m.g
I
0.361
Bra030021
Brassica rapa
Bra030021
I
0.358
Thhalv10028027m.g
Eutrema salsugineum
Thhalv10028027m.g
I
0.356
Carubv10014950m.g
Capsella rubella
Carubv10014950m.g
N
0.355
Cagra.13025s0006
Capsella grandiflora
Cagra.13025s0006
I
0.354
AT1G77570
Arabidopsis thaliana
AT1G77570
I
0.352
Bostr.26959s0010
Boechera stricta
Bostr.26959s0010
I
0.351
Bra013406
Brassica rapa
Bra013406
I
0.350
GRMZM2G115456
Zea mays
GRMZM2G115456
I
0.347
Thhalv10012073m.g
Eutrema salsugineum
Thhalv10012073m.g
I
0.346
scaffold_702873.1
Arabidopsis lyrata
scaffold_702873.1
I
0.346
Gorai.007G053900
Gossypium raimondii
Gorai.007G053900
I
0.345
Carubv10024599m.g
Capsella rubella
Carubv10024599m.g
I
0.344
VIT_10s0003g01770
Vitis vinifera
VIT_10s0003g01770
I
0.342
Bostr.3359s0057
Boechera stricta
Bostr.3359s0057
I
0.341
orange1.1g015635m.g
Citrus sinensis
orange1.1g015635m.g
I
0.341
Cagra.2516s0029
Capsella grandiflora
Cagra.2516s0029
N
0.341
Thhalv10025409m.g
Eutrema salsugineum
Thhalv10025409m.g
I
0.341
Pavir.Ib04475
Panicum virgatum
Pavir.Ib04475
I
0.340
Si035526m.g
Setaria italica
Si035526m.g
I
0.340
GRMZM2G384339
Zea mays
GRMZM2G384339
I
0.340
Thhalv10003411m.g
Eutrema salsugineum
Thhalv10003411m.g
I
0.339
Cucsa.164290
Cucumis sativus
Cucsa.164290
I
0.339
Carubv10004840m.g
Capsella rubella
Carubv10004840m.g
I
0.338
ONIVA03G43540
Oryza nivara
ONIVA03G43540
I
0.338
ORGLA03G0383200
Oryza glaberrima
ORGLA03G0383200
I
0.338
Cagra.3356s0067
Capsella grandiflora
Cagra.3356s0067
I
0.338
OMERI03G38170
Oryza meridionalis
OMERI03G38170
I
0.338
LPERR03G35390
Leersia perrieri
LPERR03G35390
I
0.338
HSFA1
Oryza sativa
OS03G0854500
I
0.338
OPUNC03G38490
Oryza punctata
OPUNC03G38490
I
0.338
OGLUM03G41290
Oryza glumaepatula
OGLUM03G41290
I
0.338
OBART03G41440
Oryza barthii
OBART03G41440
I
0.338
POPTR_0006s11680
Populus trichocarpa
POPTR_0006s11680
I
0.337
Eucgr.I00929
Eucalyptus grandis
Eucgr.I00929
I
0.337
Sb01g000730
Sorghum bicolor
Sb01g000730
I
0.336
POPTR_0011s06820
Populus trichocarpa
POPTR_0011s06820
I
0.336
Pavir.Ia00087
Panicum virgatum
Pavir.Ia00087
I
0.336
GSMUA_Achr4G04500_001
Musa acuminata
GSMUA_Achr4G04500_001
I
0.336
scaffold_601314.1
Arabidopsis lyrata
scaffold_601314.1
I
0.335
Bo1g020010
Brassica oleracea
Bo1g020010
I
0.335
PK09831.1
Cannabis sativa
PK09831.1
I
0.335
Bo7g106320
Brassica oleracea
Bo7g106320
I
0.334
HSFA4A
Arabidopsis thaliana
AT4G18880
D
0.334
Bra013358
Brassica rapa
Bra013358
I
0.334
Cagra.4306s0004
Capsella grandiflora
Cagra.4306s0004
I
0.334
Bra012571
Brassica rapa
Bra012571
I
0.334
Carubv10004953m.g
Capsella rubella
Carubv10004953m.g
I
0.334
AT-HSFA4A
Arabidopsis lyrata
fgenesh2_kg.7__2405__AT4G18880.1
I
0.334
Bostr.30275s0365
Boechera stricta
Bostr.30275s0365
I
0.334
cassava14764.m1
Manihot esculenta
cassava14764.m1
I
0.333
mgf006143m
Mimulus guttatus
mgf006143m
I
0.333
cassava24811.valid.m1
Manihot esculenta
cassava24811.valid.m1
I
0.333
MTR_8g087540
Medicago truncatula
MTR_8g087540
I
0.333
gene23802-v1.0-hybrid
Fragaria vesca
gene23802-v1.0-hybrid
I
0.333
Lus10015237.g
Linum usitatissimum
Lus10015237.g
I
0.332
Gorai.N013300
Gossypium raimondii
Gorai.N013300
I
0.332
BRADI1G01130
Brachypodium distachyon
BRADI1G01130
I
0.332
Lus10005420.g
Linum usitatissimum
Lus10005420.g
I
0.332
MDP0000126826
Malus domestica
MDP0000126826
I
0.332
OLONG_013342
Oryza longistaminata
OLONG_013342
I
0.331
evm.TU.supercontig_2.169
Carica papaya
evm.TU.supercontig_2.169
I
0.331
SapurV1A.0181s0030
Salix purpurea
SapurV1A.0181s0030
I
0.330
Ciclev10015541m.g
Citrus clementina
Ciclev10015541m.g
I
0.330
Gorai.011G036400
Gossypium raimondii
Gorai.011G036400
I
0.330
orange1.1g016378m.g
Citrus sinensis
orange1.1g016378m.g
I
0.330
TRIUR3_08676
Triticum urartu
TRIUR3_08676
I
0.329
Eucgr.E02813
Eucalyptus grandis
Eucgr.E02813
I
0.329
Aquca_014_00743
Aquilegia coerulea
Aquca_014_00743
I
0.329
TCM_029630
Theobroma cacao
TCM_029630
I
0.328
Gorai.010G240800
Gossypium raimondii
Gorai.010G240800
I
0.328
GLYMA11G01190
Glycine max
GLYMA11G01190
I
0.328
PGSC0003DMG401004023
Solanum tuberosum
PGSC0003DMG401004023
I
0.327
TCM_011279
Theobroma cacao
TCM_011279
I
0.327
Bra020988
Brassica rapa
Bra020988
I
0.327
Bo3g157380
Brassica oleracea
Bo3g157380
I
0.327
Solyc02g090820.2
Solanum lycopersicum
Solyc02g090820.2
I
0.327
SMU15027452
Schmidtea mediterranea
SMU15027452
I
0.327
BGIOSGA009826
Oryza indica
BGIOSGA009826
I
0.326
GLYMA11G06010
Glycine max
GLYMA11G06010
I
0.326
OGLUM03G33530
Oryza glumaepatula
OGLUM03G33530
I
0.326
Ca_08627
Cicer arietinum
Ca_08627
I
0.326
OBART03G33860
Oryza barthii
OBART03G33860
I
0.326
OB03G40890
Oryza brachyantha
OB03G40890
I
0.326
Bo1g021700
Brassica oleracea
Bo1g021700
I
0.326
GLYMA05G29470
Glycine max
GLYMA05G29470
I
0.326
ORUFI03G35260
Oryza rufipogon
ORUFI03G35260
I
0.326
ONIVA03G35150
Oryza nivara
ONIVA03G35150
I
0.326
GLYMA01G39260
Glycine max
GLYMA01G39260
I
0.326
ORGLA03G0308600
Oryza glaberrima
ORGLA03G0308600
I
0.326
OPUNC03G31000
Oryza punctata
OPUNC03G31000
I
0.326
Lus10007318.g
Linum usitatissimum
Lus10007318.g
I
0.325
Lus10029269.g
Linum usitatissimum
Lus10029269.g
I
0.325
Eucgr.C03465
Eucalyptus grandis
Eucgr.C03465
I
0.324
GLYMA08G12630
Glycine max
GLYMA08G12630
I
0.324
OMERI03G31070
Oryza meridionalis
OMERI03G31070
I
0.324
GLYMA01G44330
Glycine max
GLYMA01G44330
I
0.324
Bo1g007320
Brassica oleracea
Bo1g007320
I
0.323
Carubv10007409m.g
Capsella rubella
Carubv10007409m.g
I
0.323
Eucgr.C03440
Eucalyptus grandis
Eucgr.C03440
I
0.323
Pm010169
Prunus mume
Pm010169
I
0.323
PRUPE_ppa006534mg
Prunus persica
PRUPE_ppa006534mg
I
0.323
GSMUA_Achr3G27600_001
Musa acuminata
GSMUA_Achr3G27600_001
I
0.323
Cucsa.378560
Cucumis sativus
Cucsa.378560
I
0.322
PK02428.1
Cannabis sativa
PK02428.1
I
0.322
Bostr.11568s0011
Boechera stricta
Bostr.11568s0011
I
0.322
GLYMA13G29760
Glycine max
GLYMA13G29760
I
0.322
Ciclev10015472m.g
Citrus clementina
Ciclev10015472m.g
I
0.322
chr6.CM0118.920.nd
Lotus japonicus
chr6.CM0118.920.nd
I
0.321
Bra022949
Brassica rapa
Bra022949
I
0.320
HSF4
Populus trichocarpa
POPTR_0007s11030
I
0.320
AT-HSFB3
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_4001910
I
0.320
Ciclev10026058m.g
Citrus clementina
Ciclev10026058m.g
I
0.319
Traes_5BL_E15759DAD
Triticum aestivum
Traes_5BL_E15759DAD
I
0.319
cassava13765.valid.m1
Manihot esculenta
cassava13765.valid.m1
I
0.319
MLOC_57709
Hordeum vulgare
MLOC_57709
I
0.319
GSMUA_Achr7G13040_001
Musa acuminata
GSMUA_Achr7G13040_001
I
0.319
CHLREDRAFT_117914
Chlamydomonas reinhardtii
CHLREDRAFT_117914
I
0.319
HSFB3
Arabidopsis thaliana
AT2G41690
D
0.319
POPTR_0004s06090
Populus trichocarpa
POPTR_0004s06090
I
0.319
BRADI4G32130
Brachypodium distachyon
BRADI4G32130
I
0.319
Bra000235
Brassica rapa
Bra000235
I
0.318
GSMUA_Achr10G30120_001
Musa acuminata
GSMUA_Achr10G30120_001
I
0.318
MLOC_51191
Hordeum vulgare
MLOC_51191
I
0.318