Cagra.3262s0014 (Capsella grandiflora)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00447 (HSF_DNA-bind) IPR000232 Cagra.3262s0014 T243030_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HSFA4A
M06947_2.00
Arabidopsis thaliana
NNNRGAABBTTCTAGAANN

NNTTCTAGAAVVTTCYNNN
Dap-seq
OMalley et al.(2016)
HSF21_col_a
0.334 0.382
HSFB3
M06937_2.00
Arabidopsis thaliana
RRAANMWTCTAGAAV

BTTCTAGAWKNTTYY
Dap-seq
OMalley et al.(2016)
HSFB3_col_a
0.319 0.360
HSFB3
M06938_2.00
Arabidopsis thaliana
AABSTTCTAGAAN

NTTCTAGAASVTT
Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a
0.319 0.360
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.3262s0014.1.p HSF 12 104

Links

Other HSF family TFs
Other Capsella grandiflora TFs

149 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Carubv10006026m.g Capsella rubella Carubv10006026m.g I 0.606
Cagra.3262s0011 Capsella grandiflora Cagra.3262s0011 I 0.603
Carubv10006025m.g Capsella rubella Carubv10006025m.g I 0.603
Cagra.3262s0013 Capsella grandiflora Cagra.3262s0013 I 0.573
scaffold_702446.1 Arabidopsis lyrata scaffold_702446.1 N 0.530
Cagra.3262s0012 Capsella grandiflora Cagra.3262s0012 I 0.416
Bra025611 Brassica rapa Bra025611 N 0.413
scaffold_702441.1 Arabidopsis lyrata scaffold_702441.1 I 0.411
AT4G19630 Arabidopsis thaliana AT4G19630 N 0.408
scaffold_600621.1 Arabidopsis lyrata scaffold_600621.1 I 0.396
Bostr.20129s0193 Boechera stricta Bostr.20129s0193 I 0.392
Bra025606 Brassica rapa Bra025606 I 0.389
Bo4g139630 Brassica oleracea Bo4g139630 I 0.386
Bra025608 Brassica rapa Bra025608 I 0.383
Bra025635 Brassica rapa Bra025635 I 0.382
Bo4g139200 Brassica oleracea Bo4g139200 I 0.379
Thhalv10026540m.g Eutrema salsugineum Thhalv10026540m.g I 0.375
Bostr.30275s0431 Boechera stricta Bostr.30275s0431 I 0.373
Bo4g139270 Brassica oleracea Bo4g139270 N 0.373
Cagra.0096s0075 Capsella grandiflora Cagra.0096s0075 I 0.366
Carubv10021131m.g Capsella rubella Carubv10021131m.g I 0.366
Bra002882 Brassica rapa Bra002882 I 0.365
Bostr.27895s0020 Boechera stricta Bostr.27895s0020 N 0.364
Thhalv10028026m.g Eutrema salsugineum Thhalv10028026m.g I 0.364
Al_scaffold_0003_3814 Arabidopsis lyrata Al_scaffold_0003_3814 I 0.362
Thhalv10027510m.g Eutrema salsugineum Thhalv10027510m.g I 0.361
Bra030021 Brassica rapa Bra030021 I 0.358
Thhalv10028027m.g Eutrema salsugineum Thhalv10028027m.g I 0.356
Carubv10014950m.g Capsella rubella Carubv10014950m.g N 0.355
Cagra.13025s0006 Capsella grandiflora Cagra.13025s0006 I 0.354
AT1G77570 Arabidopsis thaliana AT1G77570 I 0.352
Bostr.26959s0010 Boechera stricta Bostr.26959s0010 I 0.351
Bra013406 Brassica rapa Bra013406 I 0.350
GRMZM2G115456 Zea mays GRMZM2G115456 I 0.347
Thhalv10012073m.g Eutrema salsugineum Thhalv10012073m.g I 0.346
scaffold_702873.1 Arabidopsis lyrata scaffold_702873.1 I 0.346
Gorai.007G053900 Gossypium raimondii Gorai.007G053900 I 0.345
Carubv10024599m.g Capsella rubella Carubv10024599m.g I 0.344
VIT_10s0003g01770 Vitis vinifera VIT_10s0003g01770 I 0.342
Bostr.3359s0057 Boechera stricta Bostr.3359s0057 I 0.341
orange1.1g015635m.g Citrus sinensis orange1.1g015635m.g I 0.341
Cagra.2516s0029 Capsella grandiflora Cagra.2516s0029 N 0.341
Thhalv10025409m.g Eutrema salsugineum Thhalv10025409m.g I 0.341
Pavir.Ib04475 Panicum virgatum Pavir.Ib04475 I 0.340
Si035526m.g Setaria italica Si035526m.g I 0.340
GRMZM2G384339 Zea mays GRMZM2G384339 I 0.340
Thhalv10003411m.g Eutrema salsugineum Thhalv10003411m.g I 0.339
Cucsa.164290 Cucumis sativus Cucsa.164290 I 0.339
Carubv10004840m.g Capsella rubella Carubv10004840m.g I 0.338
ONIVA03G43540 Oryza nivara ONIVA03G43540 I 0.338
ORGLA03G0383200 Oryza glaberrima ORGLA03G0383200 I 0.338
Cagra.3356s0067 Capsella grandiflora Cagra.3356s0067 I 0.338
OMERI03G38170 Oryza meridionalis OMERI03G38170 I 0.338
LPERR03G35390 Leersia perrieri LPERR03G35390 I 0.338
HSFA1 Oryza sativa OS03G0854500 I 0.338
OPUNC03G38490 Oryza punctata OPUNC03G38490 I 0.338
OGLUM03G41290 Oryza glumaepatula OGLUM03G41290 I 0.338
OBART03G41440 Oryza barthii OBART03G41440 I 0.338
POPTR_0006s11680 Populus trichocarpa POPTR_0006s11680 I 0.337
Eucgr.I00929 Eucalyptus grandis Eucgr.I00929 I 0.337
Sb01g000730 Sorghum bicolor Sb01g000730 I 0.336
POPTR_0011s06820 Populus trichocarpa POPTR_0011s06820 I 0.336
Pavir.Ia00087 Panicum virgatum Pavir.Ia00087 I 0.336
GSMUA_Achr4G04500_001 Musa acuminata GSMUA_Achr4G04500_001 I 0.336
scaffold_601314.1 Arabidopsis lyrata scaffold_601314.1 I 0.335
Bo1g020010 Brassica oleracea Bo1g020010 I 0.335
PK09831.1 Cannabis sativa PK09831.1 I 0.335
Bo7g106320 Brassica oleracea Bo7g106320 I 0.334
HSFA4A Arabidopsis thaliana AT4G18880 D 0.334
Bra013358 Brassica rapa Bra013358 I 0.334
Cagra.4306s0004 Capsella grandiflora Cagra.4306s0004 I 0.334
Bra012571 Brassica rapa Bra012571 I 0.334
Carubv10004953m.g Capsella rubella Carubv10004953m.g I 0.334
AT-HSFA4A Arabidopsis lyrata fgenesh2_kg.7__2405__AT4G18880.1 I 0.334
Bostr.30275s0365 Boechera stricta Bostr.30275s0365 I 0.334
cassava14764.m1 Manihot esculenta cassava14764.m1 I 0.333
mgf006143m Mimulus guttatus mgf006143m I 0.333
cassava24811.valid.m1 Manihot esculenta cassava24811.valid.m1 I 0.333
MTR_8g087540 Medicago truncatula MTR_8g087540 I 0.333
gene23802-v1.0-hybrid Fragaria vesca gene23802-v1.0-hybrid I 0.333
Lus10015237.g Linum usitatissimum Lus10015237.g I 0.332
Gorai.N013300 Gossypium raimondii Gorai.N013300 I 0.332
BRADI1G01130 Brachypodium distachyon BRADI1G01130 I 0.332
Lus10005420.g Linum usitatissimum Lus10005420.g I 0.332
MDP0000126826 Malus domestica MDP0000126826 I 0.332
OLONG_013342 Oryza longistaminata OLONG_013342 I 0.331
evm.TU.supercontig_2.169 Carica papaya evm.TU.supercontig_2.169 I 0.331
SapurV1A.0181s0030 Salix purpurea SapurV1A.0181s0030 I 0.330
Ciclev10015541m.g Citrus clementina Ciclev10015541m.g I 0.330
Gorai.011G036400 Gossypium raimondii Gorai.011G036400 I 0.330
orange1.1g016378m.g Citrus sinensis orange1.1g016378m.g I 0.330
TRIUR3_08676 Triticum urartu TRIUR3_08676 I 0.329
Eucgr.E02813 Eucalyptus grandis Eucgr.E02813 I 0.329
Aquca_014_00743 Aquilegia coerulea Aquca_014_00743 I 0.329
TCM_029630 Theobroma cacao TCM_029630 I 0.328
Gorai.010G240800 Gossypium raimondii Gorai.010G240800 I 0.328
GLYMA11G01190 Glycine max GLYMA11G01190 I 0.328
PGSC0003DMG401004023 Solanum tuberosum PGSC0003DMG401004023 I 0.327
TCM_011279 Theobroma cacao TCM_011279 I 0.327
Bra020988 Brassica rapa Bra020988 I 0.327
Bo3g157380 Brassica oleracea Bo3g157380 I 0.327
Solyc02g090820.2 Solanum lycopersicum Solyc02g090820.2 I 0.327
SMU15027452 Schmidtea mediterranea SMU15027452 I 0.327
BGIOSGA009826 Oryza indica BGIOSGA009826 I 0.326
GLYMA11G06010 Glycine max GLYMA11G06010 I 0.326
OGLUM03G33530 Oryza glumaepatula OGLUM03G33530 I 0.326
Ca_08627 Cicer arietinum Ca_08627 I 0.326
OBART03G33860 Oryza barthii OBART03G33860 I 0.326
OB03G40890 Oryza brachyantha OB03G40890 I 0.326
Bo1g021700 Brassica oleracea Bo1g021700 I 0.326
GLYMA05G29470 Glycine max GLYMA05G29470 I 0.326
ORUFI03G35260 Oryza rufipogon ORUFI03G35260 I 0.326
ONIVA03G35150 Oryza nivara ONIVA03G35150 I 0.326
GLYMA01G39260 Glycine max GLYMA01G39260 I 0.326
ORGLA03G0308600 Oryza glaberrima ORGLA03G0308600 I 0.326
OPUNC03G31000 Oryza punctata OPUNC03G31000 I 0.326
Lus10007318.g Linum usitatissimum Lus10007318.g I 0.325
Lus10029269.g Linum usitatissimum Lus10029269.g I 0.325
Eucgr.C03465 Eucalyptus grandis Eucgr.C03465 I 0.324
GLYMA08G12630 Glycine max GLYMA08G12630 I 0.324
OMERI03G31070 Oryza meridionalis OMERI03G31070 I 0.324
GLYMA01G44330 Glycine max GLYMA01G44330 I 0.324
Bo1g007320 Brassica oleracea Bo1g007320 I 0.323
Carubv10007409m.g Capsella rubella Carubv10007409m.g I 0.323
Eucgr.C03440 Eucalyptus grandis Eucgr.C03440 I 0.323
Pm010169 Prunus mume Pm010169 I 0.323
PRUPE_ppa006534mg Prunus persica PRUPE_ppa006534mg I 0.323
GSMUA_Achr3G27600_001 Musa acuminata GSMUA_Achr3G27600_001 I 0.323
Cucsa.378560 Cucumis sativus Cucsa.378560 I 0.322
PK02428.1 Cannabis sativa PK02428.1 I 0.322
Bostr.11568s0011 Boechera stricta Bostr.11568s0011 I 0.322
GLYMA13G29760 Glycine max GLYMA13G29760 I 0.322
Ciclev10015472m.g Citrus clementina Ciclev10015472m.g I 0.322
chr6.CM0118.920.nd Lotus japonicus chr6.CM0118.920.nd I 0.321
Bra022949 Brassica rapa Bra022949 I 0.320
HSF4 Populus trichocarpa POPTR_0007s11030 I 0.320
AT-HSFB3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001910 I 0.320
Ciclev10026058m.g Citrus clementina Ciclev10026058m.g I 0.319
Traes_5BL_E15759DAD Triticum aestivum Traes_5BL_E15759DAD I 0.319
cassava13765.valid.m1 Manihot esculenta cassava13765.valid.m1 I 0.319
MLOC_57709 Hordeum vulgare MLOC_57709 I 0.319
GSMUA_Achr7G13040_001 Musa acuminata GSMUA_Achr7G13040_001 I 0.319
CHLREDRAFT_117914 Chlamydomonas reinhardtii CHLREDRAFT_117914 I 0.319
HSFB3 Arabidopsis thaliana AT2G41690 D 0.319
POPTR_0004s06090 Populus trichocarpa POPTR_0004s06090 I 0.319
BRADI4G32130 Brachypodium distachyon BRADI4G32130 I 0.319
Bra000235 Brassica rapa Bra000235 I 0.318
GSMUA_Achr10G30120_001 Musa acuminata GSMUA_Achr10G30120_001 I 0.318
MLOC_51191 Hordeum vulgare MLOC_51191 I 0.318