Carubv10006026m.g (Capsella rubella)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00447 (HSF_DNA-bind) IPR000232 Carubv10006026m.g T243051_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HSFA4A
M06947_2.00
Arabidopsis thaliana
NNNRGAABBTTCTAGAANN

NNTTCTAGAAVVTTCYNNN
Dap-seq
OMalley et al.(2016)
HSF21_col_a
0.337 0.382
HSFB3
M06937_2.00
Arabidopsis thaliana
RRAANMWTCTAGAAV

BTTCTAGAWKNTTYY
Dap-seq
OMalley et al.(2016)
HSFB3_col_a
0.321 0.360
HSFB3
M06938_2.00
Arabidopsis thaliana
AABSTTCTAGAAN

NTTCTAGAASVTT
Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a
0.321 0.360
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10006026m HSF 12 104

Links

Other HSF family TFs
Other Capsella rubella TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Al_scaffold_0003_3814 Arabidopsis lyrata Al_scaffold_0003_3814 I 0.367
Aquca_014_00743 Aquilegia coerulea Aquca_014_00743 I 0.326
AT-HSFA4A Arabidopsis lyrata fgenesh2_kg.7__2405__AT4G18880.1 I 0.337
AT-HSFB3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001910 I 0.323
AT1G77570 Arabidopsis thaliana AT1G77570 I 0.354
AT4G19630 Arabidopsis thaliana AT4G19630 N 0.413
BGIOSGA009826 Oryza indica BGIOSGA009826 I 0.323
Bo1g005040 Brassica oleracea Bo1g005040 I 0.319
Bo1g007320 Brassica oleracea Bo1g007320 I 0.323
Bo1g020010 Brassica oleracea Bo1g020010 I 0.337
Bo1g021700 Brassica oleracea Bo1g021700 I 0.327
Bo3g157380 Brassica oleracea Bo3g157380 I 0.329
Bo4g139200 Brassica oleracea Bo4g139200 I 0.379
Bo4g139270 Brassica oleracea Bo4g139270 N 0.371
Bo4g139630 Brassica oleracea Bo4g139630 I 0.388
Bo7g106320 Brassica oleracea Bo7g106320 I 0.337
Bostr.11568s0011 Boechera stricta Bostr.11568s0011 I 0.324
Bostr.20129s0193 Boechera stricta Bostr.20129s0193 I 0.400
Bostr.26959s0010 Boechera stricta Bostr.26959s0010 I 0.358
Bostr.27895s0020 Boechera stricta Bostr.27895s0020 N 0.371
Bostr.30275s0365 Boechera stricta Bostr.30275s0365 I 0.337
Bostr.30275s0431 Boechera stricta Bostr.30275s0431 I 0.373
Bostr.3359s0057 Boechera stricta Bostr.3359s0057 I 0.343
Bra000235 Brassica rapa Bra000235 I 0.321
Bra002882 Brassica rapa Bra002882 I 0.366
Bra012571 Brassica rapa Bra012571 I 0.337
Bra013358 Brassica rapa Bra013358 I 0.337
Bra013406 Brassica rapa Bra013406 I 0.351
Bra020988 Brassica rapa Bra020988 I 0.329
Bra022949 Brassica rapa Bra022949 I 0.320
Bra025606 Brassica rapa Bra025606 I 0.391
Bra025608 Brassica rapa Bra025608 I 0.380
Bra025611 Brassica rapa Bra025611 N 0.412
Bra025635 Brassica rapa Bra025635 I 0.384
Bra030021 Brassica rapa Bra030021 I 0.359
BRADI1G01130 Brachypodium distachyon BRADI1G01130 I 0.335
Cagra.0096s0075 Capsella grandiflora Cagra.0096s0075 I 0.368
Cagra.13025s0006 Capsella grandiflora Cagra.13025s0006 I 0.358
Cagra.2516s0029 Capsella grandiflora Cagra.2516s0029 N 0.345
Cagra.3262s0011 Capsella grandiflora Cagra.3262s0011 I 0.610
Cagra.3262s0012 Capsella grandiflora Cagra.3262s0012 I 0.419
Cagra.3262s0013 Capsella grandiflora Cagra.3262s0013 I 0.580
Cagra.3262s0014 Capsella grandiflora Cagra.3262s0014 I 0.606
Cagra.3356s0067 Capsella grandiflora Cagra.3356s0067 I 0.331
Cagra.4306s0004 Capsella grandiflora Cagra.4306s0004 I 0.337
Carubv10004840m.g Capsella rubella Carubv10004840m.g I 0.331
Carubv10004953m.g Capsella rubella Carubv10004953m.g I 0.337
Carubv10006025m.g Capsella rubella Carubv10006025m.g I 0.610
Carubv10007409m.g Capsella rubella Carubv10007409m.g I 0.327
Carubv10014950m.g Capsella rubella Carubv10014950m.g N 0.359
Carubv10021131m.g Capsella rubella Carubv10021131m.g I 0.368
Carubv10024599m.g Capsella rubella Carubv10024599m.g I 0.337
cassava14764.m1 Manihot esculenta cassava14764.m1 I 0.335
cassava24811.valid.m1 Manihot esculenta cassava24811.valid.m1 I 0.335
Ca_00428 Cicer arietinum Ca_00428 I 0.319
Ca_08627 Cicer arietinum Ca_08627 I 0.323
chr6.CM0118.920.nd Lotus japonicus chr6.CM0118.920.nd I 0.324
Ciclev10015472m.g Citrus clementina Ciclev10015472m.g I 0.325
Ciclev10015541m.g Citrus clementina Ciclev10015541m.g I 0.332
Cucsa.164290 Cucumis sativus Cucsa.164290 I 0.332
Cucsa.378560 Cucumis sativus Cucsa.378560 I 0.320
Eucgr.C03440 Eucalyptus grandis Eucgr.C03440 I 0.320
Eucgr.C03465 Eucalyptus grandis Eucgr.C03465 I 0.322
Eucgr.E02813 Eucalyptus grandis Eucgr.E02813 I 0.331
Eucgr.I00929 Eucalyptus grandis Eucgr.I00929 I 0.340
evm.TU.supercontig_124.4 Carica papaya evm.TU.supercontig_124.4 I 0.321
evm.TU.supercontig_2.169 Carica papaya evm.TU.supercontig_2.169 I 0.333
gene23802-v1.0-hybrid Fragaria vesca gene23802-v1.0-hybrid I 0.336
GLYMA01G39260 Glycine max GLYMA01G39260 I 0.328
GLYMA05G29470 Glycine max GLYMA05G29470 I 0.328
GLYMA08G12630 Glycine max GLYMA08G12630 I 0.331
GLYMA11G01190 Glycine max GLYMA11G01190 I 0.321
GLYMA11G06010 Glycine max GLYMA11G06010 I 0.328
GLYMA13G29760 Glycine max GLYMA13G29760 I 0.325
Gorai.007G053900 Gossypium raimondii Gorai.007G053900 I 0.348
Gorai.010G240800 Gossypium raimondii Gorai.010G240800 I 0.331
Gorai.011G036400 Gossypium raimondii Gorai.011G036400 I 0.332
Gorai.N013300 Gossypium raimondii Gorai.N013300 I 0.335
GRMZM2G115456 Zea mays GRMZM2G115456 I 0.349
GRMZM2G384339 Zea mays GRMZM2G384339 I 0.342
GSMUA_Achr3G06020_001 Musa acuminata GSMUA_Achr3G06020_001 I 0.324
GSMUA_Achr3G27600_001 Musa acuminata GSMUA_Achr3G27600_001 I 0.325
GSMUA_Achr4G04500_001 Musa acuminata GSMUA_Achr4G04500_001 I 0.338
HSF4 Populus trichocarpa POPTR_0007s11030 I 0.322
HSFA1 Oryza sativa OS03G0854500 I 0.340
HSFA4A Arabidopsis thaliana AT4G18880 D 0.337
HSFB3 Arabidopsis thaliana AT2G41690 D 0.321
LPERR03G35390 Leersia perrieri LPERR03G35390 I 0.340
Lus10005420.g Linum usitatissimum Lus10005420.g I 0.335
Lus10007318.g Linum usitatissimum Lus10007318.g I 0.328
Lus10015237.g Linum usitatissimum Lus10015237.g I 0.335
Lus10026819.g Linum usitatissimum Lus10026819.g I 0.319
Lus10029269.g Linum usitatissimum Lus10029269.g I 0.328
MDP0000126826 Malus domestica MDP0000126826 I 0.334
mgf006143m Mimulus guttatus mgf006143m I 0.336
MLOC_51191 Hordeum vulgare MLOC_51191 I 0.321
MTR_8g087540 Medicago truncatula MTR_8g087540 I 0.336
OB03G40890 Oryza brachyantha OB03G40890 I 0.323
OBART03G33860 Oryza barthii OBART03G33860 I 0.323
OBART03G41440 Oryza barthii OBART03G41440 I 0.340
OGLUM03G33530 Oryza glumaepatula OGLUM03G33530 I 0.323
OGLUM03G41290 Oryza glumaepatula OGLUM03G41290 I 0.340
OLONG_013342 Oryza longistaminata OLONG_013342 I 0.333
OMERI03G31070 Oryza meridionalis OMERI03G31070 I 0.322
OMERI03G38170 Oryza meridionalis OMERI03G38170 I 0.340
ONIVA03G35150 Oryza nivara ONIVA03G35150 I 0.324
ONIVA03G43540 Oryza nivara ONIVA03G43540 I 0.340
OPUNC03G31000 Oryza punctata OPUNC03G31000 I 0.323
OPUNC03G38490 Oryza punctata OPUNC03G38490 I 0.340
orange1.1g015635m.g Citrus sinensis orange1.1g015635m.g I 0.344
orange1.1g016378m.g Citrus sinensis orange1.1g016378m.g I 0.332
ORGLA03G0308600 Oryza glaberrima ORGLA03G0308600 I 0.323
ORGLA03G0383200 Oryza glaberrima ORGLA03G0383200 I 0.340
ORUFI03G35260 Oryza rufipogon ORUFI03G35260 I 0.323
ORUFI03G43230 Oryza rufipogon ORUFI03G43230 I 0.319
Pavir.Ia00087 Panicum virgatum Pavir.Ia00087 I 0.338
Pavir.Ib04475 Panicum virgatum Pavir.Ib04475 I 0.342
PGSC0003DMG401004023 Solanum tuberosum PGSC0003DMG401004023 I 0.330
PGSC0003DMG401027812 Solanum tuberosum PGSC0003DMG401027812 I 0.323
PK02428.1 Cannabis sativa PK02428.1 I 0.325
PK03562.1 Cannabis sativa PK03562.1 I 0.321
PK09831.1 Cannabis sativa PK09831.1 I 0.338
Pm005887 Prunus mume Pm005887 I 0.320
Pm010169 Prunus mume Pm010169 I 0.325
POPTR_0004s06090 Populus trichocarpa POPTR_0004s06090 I 0.322
POPTR_0006s11680 Populus trichocarpa POPTR_0006s11680 I 0.329
POPTR_0011s06820 Populus trichocarpa POPTR_0011s06820 I 0.338
PRUPE_ppa006514mg Prunus persica PRUPE_ppa006514mg I 0.320
PRUPE_ppa006534mg Prunus persica PRUPE_ppa006534mg I 0.325
SapurV1A.0181s0030 Salix purpurea SapurV1A.0181s0030 I 0.333
Sb01g000730 Sorghum bicolor Sb01g000730 I 0.338
scaffold_600621.1 Arabidopsis lyrata scaffold_600621.1 I 0.403
scaffold_601314.1 Arabidopsis lyrata scaffold_601314.1 I 0.333
scaffold_702441.1 Arabidopsis lyrata scaffold_702441.1 I 0.418
scaffold_702446.1 Arabidopsis lyrata scaffold_702446.1 N 0.535
scaffold_702873.1 Arabidopsis lyrata scaffold_702873.1 I 0.346
Si035526m.g Setaria italica Si035526m.g I 0.342
SMU15027452 Schmidtea mediterranea SMU15027452 I 0.327
Solyc02g090820.2 Solanum lycopersicum Solyc02g090820.2 I 0.330
Solyc03g006000.2 Solanum lycopersicum Solyc03g006000.2 I 0.321
TCM_011279 Theobroma cacao TCM_011279 I 0.329
TCM_029630 Theobroma cacao TCM_029630 I 0.331
Thhalv10003411m.g Eutrema salsugineum Thhalv10003411m.g I 0.345
Thhalv10012073m.g Eutrema salsugineum Thhalv10012073m.g I 0.352
Thhalv10017795m.g Eutrema salsugineum Thhalv10017795m.g I 0.319
Thhalv10025409m.g Eutrema salsugineum Thhalv10025409m.g I 0.333
Thhalv10026540m.g Eutrema salsugineum Thhalv10026540m.g I 0.377
Thhalv10027510m.g Eutrema salsugineum Thhalv10027510m.g I 0.364
Thhalv10028026m.g Eutrema salsugineum Thhalv10028026m.g I 0.362
Thhalv10028027m.g Eutrema salsugineum Thhalv10028027m.g I 0.363
Traes_5BL_E15759DAD Triticum aestivum Traes_5BL_E15759DAD I 0.322
TRIUR3_08676 Triticum urartu TRIUR3_08676 I 0.332
TRIUR3_25943 Triticum urartu TRIUR3_25943 I 0.319
VIT_10s0003g01770 Vitis vinifera VIT_10s0003g01770 I 0.344