Carubv10007768m.g (Capsella rubella)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00447 (HSF_DNA-bind) IPR000232 Carubv10007768m.g T243055_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HSFB2A
M00869_2.00
Arabidopsis thaliana
NNNNNTTCB

VGAANNNNN
PBM
Franco-Zorrilla et al.(2014)
HSFB2A
0.330 0.417
HSFB2A
M06952_2.00
Arabidopsis thaliana
GAANNTTCYAGA

TCTRGAANNTTC
Dap-seq
OMalley et al.(2016)
HSF6_col_a
0.330 0.417
HSFA6A
M06950_2.00
Arabidopsis thaliana
GAASNTTCTAGAANNW

WNNTTCTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFA6A_col_a
0.322 0.417
HSFA6A
M06951_2.00
Arabidopsis thaliana
GAASNTTCTAGAA

TTCTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFA6A_colamp_a
0.322 0.417
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10007768m HSF 32 119

Links

Other HSF family TFs
Other Capsella rubella TFs

Invalid Input OrderBy

24 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action