Carubv10027643m.g (Capsella rubella)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00447 (HSF_DNA-bind) IPR000232 Carubv10027643m.g T243070_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HSFA4A
M06947_2.00
Arabidopsis thaliana
NNNRGAABBTTCTAGAANN

NNTTCTAGAAVVTTCYNNN
Dap-seq
OMalley et al.(2016)
HSF21_col_a
0.378 0.526
HSFA1E
M06939_2.00
Arabidopsis thaliana
RGAANNTTCTAGA

TCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSFA1E_col_a
0.342 0.434
HSFA1E
M06940_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN

NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a
0.342 0.434
HSFA1B
M06948_2.00
Arabidopsis thaliana
GAANNTTCTAGA

TCTAGAANNTTC
Dap-seq
OMalley et al.(2016)
HSF3_col_a
0.322 0.408
HSFA1B
M06949_2.00
Arabidopsis thaliana
TTCYRG

CYRGAA
Dap-seq
OMalley et al.(2016)
HSF3_colamp_a
0.322 0.408
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10027643m HSF 1 80

Links

Other HSF family TFs
Other Capsella rubella TFs

Invalid Input OrderBy

504 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action