CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MDP0000194672
(
Malus domestica
)
HSF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00447 (HSF_DNA-bind)
IPR000232
MDP0000194672
T243266_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HSFA1E
M06939_2.00
Arabidopsis thaliana
RGAANNTTCTAGA
TCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSFA1E_col_a
0.360
0.460
HSFA1E
M06940_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a
0.360
0.460
HSFA4A
M06947_2.00
Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN
Dap-seq
OMalley et al.(2016)
HSF21_col_a
0.350
0.506
HSFA1B
M06948_2.00
Arabidopsis thaliana
GAANNTTCTAGA
TCTAGAANNTTC
Dap-seq
OMalley et al.(2016)
HSF3_col_a
0.348
0.483
HSFA1B
M06949_2.00
Arabidopsis thaliana
TTCYRG
CYRGAA
Dap-seq
OMalley et al.(2016)
HSF3_colamp_a
0.348
0.483
HSFB4
M06936_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFB4_col_a
0.323
0.425
HSFB2B
M06945_2.00
Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSF7_col_a
0.319
0.414
HSFB2B
M06946_2.00
Arabidopsis thaliana
RGAANNTTCTAGAA
TTCTAGAANNTTCY
Dap-seq
OMalley et al.(2016)
HSF7_colamp_a
0.319
0.414
For this family, TFs with SR scores >
0.318
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000194672
HSF
148
279
FLNKTFQMVDDPETDSIVSWSDARQSFIVWDLYEFSSTLLPKHFKHNNFSSFIRQLNTYEGXRGVGFTSNCXHVSDFWVVXPEFRSTGXGSAXDAYSCTQGFRKVDPDRWEFANERFQGGKRHLLKNIKRRR
Links
Other
HSF
family TFs
Other
Malus domestica
TFs
814 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy