Pavir.Ia01908 (Panicum virgatum)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00447 (HSF_DNA-bind) IPR000232 Pavir.Ia01908 T243342_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HSFA6B
M06941_2.00
Arabidopsis thaliana
RGAASNTTCTAGA

TCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFA6B_colamp_a
0.369 0.815
HSFA6B
M06942_2.00
Arabidopsis thaliana
RGAABNTTCTRGAAN

NTTCYAGAANVTTCY
Dap-seq
OMalley et al.(2016)
HSFA6B_col
0.369 0.815
HSFA6A
M06950_2.00
Arabidopsis thaliana
GAASNTTCTAGAANNW

WNNTTCTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFA6A_col_a
0.346 0.738
HSFA6A
M06951_2.00
Arabidopsis thaliana
GAASNTTCTAGAA

TTCTAGAANSTTC
Dap-seq
OMalley et al.(2016)
HSFA6A_colamp_a
0.346 0.738
HSFA4A
M06947_2.00
Arabidopsis thaliana
NNNRGAABBTTCTAGAANN

NNTTCTAGAAVVTTCYNNN
Dap-seq
OMalley et al.(2016)
HSF21_col_a
0.326 0.692
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia01908.1.p HSF 1 66

Links

Other HSF family TFs
Other Panicum virgatum TFs

Invalid Input OrderBy

688 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action