CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PK12075.1
(
Cannabis sativa
)
HSF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00447 (HSF_DNA-bind)
IPR000232
PK12075.1
T243461_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HSFA1B
M06948_2.00
Arabidopsis thaliana
GAANNTTCTAGA
TCTAGAANNTTC
Dap-seq
OMalley et al.(2016)
HSF3_col_a
0.336
0.731
HSFA1B
M06949_2.00
Arabidopsis thaliana
TTCYRG
CYRGAA
Dap-seq
OMalley et al.(2016)
HSF3_colamp_a
0.336
0.731
HSFA6B
M06941_2.00
Arabidopsis thaliana
RGAASNTTCTAGA
TCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
HSFA6B_colamp_a
0.322
0.701
HSFA6B
M06942_2.00
Arabidopsis thaliana
RGAABNTTCTRGAAN
NTTCYAGAANVTTCY
Dap-seq
OMalley et al.(2016)
HSFA6B_col
0.322
0.701
For this family, TFs with SR scores >
0.318
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PK12075.1
HSF
1
68
RDSFIVWDSHEFSKNLLPKYFKHSNFSSFIRQLNTYGFKKIDPDRWEFANKGFQGGKKHLLKDIKRRS
Links
Other
HSF
family TFs
Other
Cannabis sativa
TFs
405 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy