irf2 (Danio rerio)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSDARG00000040465 T244013_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
IRF2
M05545_2.00
Homo sapiens
NGAAAVYGAAAS

STTTCRBTTTCN
SELEX
Yin et al.(2017)
IRF2_FL_HT-SELEX
0.923 0.923
IRF2
M02691_2.00
Homo sapiens
SGAAAGYGAAASYNWWHH

DDWWNRSTTTCRCTTTCS
SELEX
Mathelier et al.(2014)
MA0051.1
0.923 0.923
IRF2
M09237_2.00
Homo sapiens
NRAANNGAAASYGAAASYRV

BYRSTTTCRSTTTCNNTTYN
Misc
Kulakovskiy et al.(2013)
IRF2_HUMAN.H11MO.0.A
0.923 0.923
IRF2
M09596_2.00
Homo sapiens
NRAAVNRRAASB

VSTTYYNBTTYN
Misc
Heinz et al.(2010)
Erythroblas-IRF2_GSE36985
0.923 0.923
IRF2
M10892_2.00
Homo sapiens
GAAAAGYGAAASY

RSTTTCRCTTTTC
Transfac
Matys et al.(2006)
V$IRF2_01
0.923 0.923
IRF2
M10893_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF2_Q6
0.923 0.923
IRF2
M05546_2.00
Homo sapiens
NGAAASYGAAAS

STTTCRSTTTCN
SELEX
Yin et al.(2017)
IRF2_FL_Methyl-HT-SELEX
0.923 0.923
Irf2
M00805_2.00
Mus musculus
NDWNHGAAAV

BTTTCDNWHN
PBM
Weirauch et al.(2013)
pTH2835
0.913 0.913
Irf2
M09245_2.00
Mus musculus
NRAANNGAAASYGAAASYRV

BYRSTTTCRSTTTCNNTTYN
Misc
Kulakovskiy et al.(2013)
IRF2_MOUSE.H11MO.0.B
0.913 0.913
IRF1
M08142_2.00
Homo sapiens
RWANNGAAASYGAAASYRNNN

NNNYRSTTTCRSTTTCNNTWY
ChIP-seq
Mathelier et al.(2014)
MA0050.2
0.779 0.779
IRF1
M09233_2.00
Homo sapiens
NRAANNGAAASWGAAASHRN

NYDSTTTCWSTTTCNNTTYN
Misc
Kulakovskiy et al.(2013)
IRF1_HUMAN.H11MO.0.A
0.779 0.779
Irf1
M09242_2.00
Mus musculus
VRAANNGAAASYGAAASYVN

NBRSTTTCRSTTTCNNTTYB
Misc
Kulakovskiy et al.(2013)
IRF1_MOUSE.H11MO.0.A
0.779 0.779
IRF1
M09594_2.00
Homo sapiens
GAAASTGAAASY

RSTTTCASTTTC
Misc
Heinz et al.(2010)
PBMC-IRF1_GSE43036
0.779 0.779
IRF1
M10879_2.00
Homo sapiens
SAAAASYGAAASY

RSTTTCRSTTTTS
Transfac
Matys et al.(2006)
V$IRF1_01
0.779 0.779
IRF1
M10880_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF1_03
0.779 0.779
IRF1
M10881_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF1_Q5
0.779 0.779
IRF1
M10882_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF1_Q6
0.779 0.779
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000059229 IRF 22 126
ENSDARP00000130583 IRF 7 111

Links

Other IRF family TFs
Other Danio rerio TFs

139 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29640.m000403 Ricinus communis 29640.m000403 I 0.000
30174.m008755 Ricinus communis 30174.m008755 I 0.000
30174.m008756 Ricinus communis 30174.m008756 I 0.000
30174.m008759 Ricinus communis 30174.m008759 I 0.000
30190.m011323 Ricinus communis 30190.m011323 I 0.000
AMTR_s00002p00264660 Amborella trichopoda AMTR_s00002p00264660 I 0.000
AMTR_s00040p00180260 Amborella trichopoda AMTR_s00040p00180260 I 0.000
Aquca_017_00628 Aquilegia coerulea Aquca_017_00628 I 0.000
Aquca_027_00311 Aquilegia coerulea Aquca_027_00311 I 0.000
Aquca_036_00073 Aquilegia coerulea Aquca_036_00073 I 0.000
ERF3 Arabidopsis thaliana AT1G50640 D 0.000
ERF13 Arabidopsis thaliana AT2G44840 D 0.000
ERF7 Arabidopsis thaliana AT3G20310 D 0.000
BGIOSGA017797 Oryza indica BGIOSGA017797 I 0.000
BGIOSGA029071 Oryza indica BGIOSGA029071 I 0.000
Bo3g074840 Brassica oleracea Bo3g074840 I 0.000
Bo4g024140 Brassica oleracea Bo4g024140 I 0.000
Bo4g195220 Brassica oleracea Bo4g195220 I 0.000
Bo6g022410 Brassica oleracea Bo6g022410 I 0.000
Bo7g040810 Brassica oleracea Bo7g040810 I 0.000
Bostr.26675s0113 Boechera stricta Bostr.26675s0113 I 0.000
Bra001784 Brassica rapa Bra001784 I 0.000
Bra004873 Brassica rapa Bra004873 I 0.000
Bra014925 Brassica rapa Bra014925 I 0.000
Bra018864 Brassica rapa Bra018864 I 0.000
Bra037630 Brassica rapa Bra037630 I 0.000
BRADI2G21067 Brachypodium distachyon BRADI2G21067 I 0.000
BRADI3G06562 Brachypodium distachyon BRADI3G06562 I 0.000
Cagra.0239s0035 Capsella grandiflora Cagra.0239s0035 I 0.000
Cagra.0952s0001 Capsella grandiflora Cagra.0952s0001 I 0.000
Carubv10010284m.g Capsella rubella Carubv10010284m.g I 0.000
Carubv10023967m.g Capsella rubella Carubv10023967m.g I 0.000
cassava19883.m1 Manihot esculenta cassava19883.m1 I 0.000
cassava34729.m1 Manihot esculenta cassava34729.m1 I 0.000
cassava42971.valid.m1 Manihot esculenta cassava42971.valid.m1 I 0.000
cassava43266.valid.m1 Manihot esculenta cassava43266.valid.m1 I 0.000
cassava4486.m1 Manihot esculenta cassava4486.m1 I 0.000
cassava6588.valid.m1 Manihot esculenta cassava6588.valid.m1 I 0.000
Ca_00326 Cicer arietinum Ca_00326 I 0.000
Ca_12205 Cicer arietinum Ca_12205 I 0.000
Ca_17824 Cicer arietinum Ca_17824 I 0.000
chr1.CM0375.170.nd Lotus japonicus chr1.CM0375.170.nd I 0.000
chr2.LjT24P12.30.nd Lotus japonicus chr2.LjT24P12.30.nd I 0.000
chr3.CM0080.270.nc Lotus japonicus chr3.CM0080.270.nc I 0.000
chr6.CM0114.130.nc Lotus japonicus chr6.CM0114.130.nc I 0.000
Ciclev10009361m.g Citrus clementina Ciclev10009361m.g I 0.000
Ciclev10016668m.g Citrus clementina Ciclev10016668m.g I 0.000
Ciclev10016982m.g Citrus clementina Ciclev10016982m.g I 0.000
Cla003319 Citrullus lanatus Cla003319 I 0.000
Cla005423 Citrullus lanatus Cla005423 I 0.000
Cla013723 Citrullus lanatus Cla013723 I 0.000
Cla020002 Citrullus lanatus Cla020002 I 0.000
Cucsa.042770 Cucumis sativus Cucsa.042770 I 0.000
Cucsa.126860 Cucumis sativus Cucsa.126860 I 0.000
Cucsa.129330 Cucumis sativus Cucsa.129330 I 0.000
Cucsa.139820 Cucumis sativus Cucsa.139820 I 0.000
Cucsa.190200 Cucumis sativus Cucsa.190200 I 0.000
Cucsa.255330 Cucumis sativus Cucsa.255330 I 0.000
estExt_gwp_gw1.C_1270048 Physcomitrella patens estExt_gwp_gw1.C_1270048 I 0.000
Eucgr.A01091 Eucalyptus grandis Eucgr.A01091 I 0.000
Eucgr.G00002 Eucalyptus grandis Eucgr.G00002 I 0.000
Eucgr.G00397 Eucalyptus grandis Eucgr.G00397 I 0.000
evm.TU.supercontig_12.251 Carica papaya evm.TU.supercontig_12.251 I 0.000
evm.TU.supercontig_132.31 Carica papaya evm.TU.supercontig_132.31 I 0.000
evm.TU.supercontig_27.18 Carica papaya evm.TU.supercontig_27.18 I 0.000
evm.TU.supercontig_44.73 Carica papaya evm.TU.supercontig_44.73 I 0.000
e_gw1.124.59.1 Physcomitrella patens e_gw1.124.59.1 I 0.000
e_gw1.487.2.1 Physcomitrella patens e_gw1.487.2.1 I 0.000
ERF3 Arabidopsis lyrata fgenesh2_kg.1__4150__AT1G50640.1 I 0.000
fgenesh2_kg.3__2537__AT3G23220.1 Arabidopsis lyrata fgenesh2_kg.3__2537__AT3G23220.1 I 0.000
gene01152-v1.0-hybrid Fragaria vesca gene01152-v1.0-hybrid I 0.000
gene03450-v1.0-hybrid Fragaria vesca gene03450-v1.0-hybrid I 0.000
gene04913-v1.0-hybrid Fragaria vesca gene04913-v1.0-hybrid I 0.000
gene04917-v1.0-hybrid Fragaria vesca gene04917-v1.0-hybrid I 0.000
gene21403-v1.0-hybrid Fragaria vesca gene21403-v1.0-hybrid I 0.000
gene29735-v1.0-hybrid Fragaria vesca gene29735-v1.0-hybrid I 0.000
GLYMA02G43500 Glycine max GLYMA02G43500 I 0.000
GLYMA02G46340 Glycine max GLYMA02G46340 I 0.000
GLYMA03G31640 Glycine max GLYMA03G31640 I 0.000
GLYMA06G44430 Glycine max GLYMA06G44430 I 0.000
GLYMA10G23460 Glycine max GLYMA10G23460 I 0.000
GLYMA12G13315 Glycine max GLYMA12G13315 I 0.000
GLYMA13G31010 Glycine max GLYMA13G31010 I 0.000
GLYMA14G02360 Glycine max GLYMA14G02360 I 0.000
GLYMA14G05470 Glycine max GLYMA14G05470 I 0.000
GLYMA15G08360 Glycine max GLYMA15G08360 I 0.000
GLYMA20G16920 Glycine max GLYMA20G16920 I 0.000
Gorai.001G252400 Gossypium raimondii Gorai.001G252400 I 0.000
Gorai.002G092900 Gossypium raimondii Gorai.002G092900 I 0.000
Gorai.004G032500 Gossypium raimondii Gorai.004G032500 I 0.000
Gorai.007G312200 Gossypium raimondii Gorai.007G312200 I 0.000
Gorai.009G443400 Gossypium raimondii Gorai.009G443400 I 0.000
Gorai.011G029700 Gossypium raimondii Gorai.011G029700 I 0.000
Gorai.013G169500 Gossypium raimondii Gorai.013G169500 I 0.000
GRMZM2G020016 Zea mays GRMZM2G020016 I 0.000
GRMZM2G079653 Zea mays GRMZM2G079653 I 0.000
GRMZM2G103085 Zea mays GRMZM2G103085 I 0.000
GRMZM2G146028 Zea mays GRMZM2G146028 I 0.000
GSMUA_Achr3G13010_001 Musa acuminata GSMUA_Achr3G13010_001 I 0.000
GSMUA_Achr3G29290_001 Musa acuminata GSMUA_Achr3G29290_001 I 0.000
GSMUA_Achr4G04060_001 Musa acuminata GSMUA_Achr4G04060_001 I 0.000
GSMUA_Achr4G06170_001 Musa acuminata GSMUA_Achr4G06170_001 I 0.000
GSMUA_Achr4G06660_001 Musa acuminata GSMUA_Achr4G06660_001 I 0.000
GSMUA_Achr4G11430_001 Musa acuminata GSMUA_Achr4G11430_001 I 0.000
GSMUA_Achr5G09940_001 Musa acuminata GSMUA_Achr5G09940_001 I 0.000
GSMUA_Achr6G00240_001 Musa acuminata GSMUA_Achr6G00240_001 I 0.000
GSMUA_Achr6G01440_001 Musa acuminata GSMUA_Achr6G01440_001 I 0.000
GSMUA_AchrUn_randomG06910_001 Musa acuminata GSMUA_AchrUn_randomG06910_001 I 0.000
gw1.90.191.1 Physcomitrella patens gw1.90.191.1 I 0.000
LPERR02G05920 Leersia perrieri LPERR02G05920 I 0.000
LPERR05G17470 Leersia perrieri LPERR05G17470 I 0.000
Lus10016212.g Linum usitatissimum Lus10016212.g I 0.000
Lus10029987.g Linum usitatissimum Lus10029987.g I 0.000
Lus10031526.g Linum usitatissimum Lus10031526.g I 0.000
Lus10035329.g Linum usitatissimum Lus10035329.g I 0.000
Lus10043182.g Linum usitatissimum Lus10043182.g I 0.000
MDP0000236605 Malus domestica MDP0000236605 I 0.000
MDP0000243113 Malus domestica MDP0000243113 I 0.000
MDP0000310904 Malus domestica MDP0000310904 I 0.000
MDP0000457509 Malus domestica MDP0000457509 I 0.000
MDP0000542633 Malus domestica MDP0000542633 I 0.000
MDP0000629527 Malus domestica MDP0000629527 I 0.000
MDP0000744693 Malus domestica MDP0000744693 I 0.000
MDP0000839828 Malus domestica MDP0000839828 I 0.000
mgf007166m Mimulus guttatus mgf007166m I 0.000
mgf016282m Mimulus guttatus mgf016282m I 0.000
mgf023367m Mimulus guttatus mgf023367m I 0.000
MLOC_10878 Hordeum vulgare MLOC_10878 I 0.000
MTR_2g014300 Medicago truncatula MTR_2g014300 I 0.000
MTR_5g085070 Medicago truncatula MTR_5g085070 I 0.000
MTR_5g085100 Medicago truncatula MTR_5g085100 I 0.000
MTR_8g006815 Medicago truncatula MTR_8g006815 I 0.000
OGLUM02G06860 Oryza glumaepatula OGLUM02G06860 I 0.000
OGLUM05G22780 Oryza glumaepatula OGLUM05G22780 I 0.000
OMERI02G07840 Oryza meridionalis OMERI02G07840 I 0.000
OMERI05G19480 Oryza meridionalis OMERI05G19480 I 0.000
OMERI08G16840 Oryza meridionalis OMERI08G16840 I 0.000
ONIVA05G22260 Oryza nivara ONIVA05G22260 I 0.000
OPUNC02G05940 Oryza punctata OPUNC02G05940 I 0.000
OPUNC02G31100 Oryza punctata OPUNC02G31100 I 0.000
OPUNC05G19220 Oryza punctata OPUNC05G19220 I 0.000
orange1.1g027990m.g Citrus sinensis orange1.1g027990m.g I 0.000
orange1.1g030994m.g Citrus sinensis orange1.1g030994m.g I 0.000
orange1.1g044584m.g Citrus sinensis orange1.1g044584m.g I 0.000
orange1.1g045783m.g Citrus sinensis orange1.1g045783m.g I 0.000
ORGLA02G0063000 Oryza glaberrima ORGLA02G0063000 I 0.000
ORGLA05G0187500 Oryza glaberrima ORGLA05G0187500 I 0.000
ORGLA08G0225800 Oryza glaberrima ORGLA08G0225800 I 0.000
ORUFI02G06880 Oryza rufipogon ORUFI02G06880 I 0.000
ORUFI05G22840 Oryza rufipogon ORUFI05G22840 I 0.000
OS05G0497200 Oryza sativa OS05G0497200 D 0.000
Pavir.Aa03102 Panicum virgatum Pavir.Aa03102 I 0.000
Pavir.Ab00660 Panicum virgatum Pavir.Ab00660 I 0.000
Pavir.Da00220 Panicum virgatum Pavir.Da00220 I 0.000
Pavir.Eb03165 Panicum virgatum Pavir.Eb03165 I 0.000
PGSC0003DMG400000681 Solanum tuberosum PGSC0003DMG400000681 I 0.000
PGSC0003DMG400014417 Solanum tuberosum PGSC0003DMG400014417 I 0.000
PGSC0003DMG400022305 Solanum tuberosum PGSC0003DMG400022305 I 0.000
PGSC0003DMG400029713 Solanum tuberosum PGSC0003DMG400029713 I 0.000
PK02998.1 Cannabis sativa PK02998.1 I 0.000
PK17878.1 Cannabis sativa PK17878.1 D 0.000
PK23186.1 Cannabis sativa PK23186.1 I 0.000
PK25211.1 Cannabis sativa PK25211.1 I 0.000
Pm010083 Prunus mume Pm010083 I 0.000
Pm011907 Prunus mume Pm011907 I 0.000
Pm014953 Prunus mume Pm014953 I 0.000
Pm017696 Prunus mume Pm017696 I 0.000
Pm020210 Prunus mume Pm020210 I 0.000
POPTR_0001s36610 Populus trichocarpa POPTR_0001s36610 I 0.000
POPTR_0002s04430 Populus trichocarpa POPTR_0002s04430 I 0.000
POPTR_0004s04700 Populus trichocarpa POPTR_0004s04700 I 0.000
POPTR_0005s24110 Populus trichocarpa POPTR_0005s24110 I 0.000
POPTR_0011s05570 Populus trichocarpa POPTR_0011s05570 I 0.000
POPTR_0014s04640 Populus trichocarpa POPTR_0014s04640 I 0.000
PRUPE_ppa010804mg Prunus persica PRUPE_ppa010804mg I 0.000
PRUPE_ppa010893mg Prunus persica PRUPE_ppa010893mg I 0.000
PRUPE_ppa012385mg Prunus persica PRUPE_ppa012385mg I 0.000
PRUPE_ppa016903mg Prunus persica PRUPE_ppa016903mg I 0.000
PRUPE_ppa022435mg Prunus persica PRUPE_ppa022435mg I 0.000
PRUPE_ppb014367mg Prunus persica PRUPE_ppb014367mg I 0.000
SapurV1A.0007s0970 Salix purpurea SapurV1A.0007s0970 I 0.000
SapurV1A.0012s0570 Salix purpurea SapurV1A.0012s0570 I 0.000
SapurV1A.0032s0450 Salix purpurea SapurV1A.0032s0450 I 0.000
SapurV1A.0124s0170 Salix purpurea SapurV1A.0124s0170 I 0.000
SapurV1A.0126s0320 Salix purpurea SapurV1A.0126s0320 I 0.000
SapurV1A.0126s0330 Salix purpurea SapurV1A.0126s0330 I 0.000
Sb03g037085 Sorghum bicolor Sb03g037085 I 0.000
Sb04g006080 Sorghum bicolor Sb04g006080 I 0.000
Sb07g025843 Sorghum bicolor Sb07g025843 I 0.000
Sb08g004260 Sorghum bicolor Sb08g004260 I 0.000
ATERF13 Arabidopsis lyrata scaffold_403422.1 I 0.000
SELMODRAFT_129122 Selaginella moellendorffii SELMODRAFT_129122 I 0.000
SELMODRAFT_17648 Selaginella moellendorffii SELMODRAFT_17648 I 0.000
SELMODRAFT_430375 Selaginella moellendorffii SELMODRAFT_430375 I 0.000
SELMODRAFT_443461 Selaginella moellendorffii SELMODRAFT_443461 I 0.000
SELMODRAFT_49950 Selaginella moellendorffii SELMODRAFT_49950 I 0.000
SELMODRAFT_72880 Selaginella moellendorffii SELMODRAFT_72880 I 0.000
SELMODRAFT_73142 Selaginella moellendorffii SELMODRAFT_73142 I 0.000
SELMODRAFT_73144 Selaginella moellendorffii SELMODRAFT_73144 I 0.000
Solyc02g077840.1 Solanum lycopersicum Solyc02g077840.1 I 0.000
Solyc07g049490.1 Solanum lycopersicum Solyc07g049490.1 I 0.000
Solyc07g064890.1 Solanum lycopersicum Solyc07g064890.1 I 0.000
Solyc10g006130.1 Solanum lycopersicum Solyc10g006130.1 I 0.000
TCM_005706 Theobroma cacao TCM_005706 I 0.000
TCM_005707 Theobroma cacao TCM_005707 I 0.000
TCM_029823 Theobroma cacao TCM_029823 I 0.000
TCM_030804 Theobroma cacao TCM_030804 I 0.000
Thhalv10001758m.g Eutrema salsugineum Thhalv10001758m.g I 0.000
Thhalv10011689m.g Eutrema salsugineum Thhalv10011689m.g I 0.000
Thhalv10021393m.g Eutrema salsugineum Thhalv10021393m.g I 0.000
Thhalv10022108m.g Eutrema salsugineum Thhalv10022108m.g I 0.000
Thhalv10022200m.g Eutrema salsugineum Thhalv10022200m.g I 0.000
Traes_5BL_FBC7AF288 Triticum aestivum Traes_5BL_FBC7AF288 I 0.000
VIT_07s0141g00690 Vitis vinifera VIT_07s0141g00690 I 0.000
ERF12 Vitis vinifera VIT_10s0003g00130 I 0.000
VIT_12s0059g01460 Vitis vinifera VIT_12s0059g01460 I 0.000
VIT_14s0081g00520 Vitis vinifera VIT_14s0081g00520 I 0.000
VIT_19s0090g01080 Vitis vinifera VIT_19s0090g01080 I 0.000