irf4b (Tetraodon nigroviridis)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSTNIG00000008222 T244420_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
IRF4
M03334_2.00
Homo sapiens
HCGAAACCGAAACYW

WRGTTTCGGTTTCGD
SELEX
Jolma et al.(2013)
IRF4_1
0.943 0.943
IRF4
M05539_2.00
Homo sapiens
NYGAAACYGAAACYN

NRGTTTCRGTTTCRN
SELEX
Yin et al.(2017)
IRF4_FL_HT-SELEX
0.943 0.943
IRF4
M07978_2.00
Homo sapiens
DNDVNNGWWVTGAVWVWN

NWBWBTCABWWCNNBHNH
ChIP-seq
Gerstein et al.(2012)
GM12878_IRF4_HudsonAlpha
0.943 0.943
IRF4
M09235_2.00
Homo sapiens
NDWDRRGGAASTGARAVH

DBTYTCASTTCCYYHWHN
Misc
Kulakovskiy et al.(2013)
IRF4_HUMAN.H11MO.0.A
0.943 0.943
IRF4
M09595_2.00
Homo sapiens
HNYGAAASYD

HRSTTTCRND
Misc
Heinz et al.(2010)
GM12878-IRF4_GSE32465
0.943 0.943
IRF4
M10885_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF4_07
0.943 0.943
IRF4
M10886_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF4_08
0.943 0.943
IRF4
M10887_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF4_Q5_01
0.943 0.943
IRF4
M10888_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF4_Q5
0.943 0.943
IRF4
M10889_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF4_Q6
0.943 0.943
IRF4
M05540_2.00
Homo sapiens
NYGAAASYGAWASHN

NDSTWTCRSTTTCRN
SELEX
Yin et al.(2017)
IRF4_FL_Methyl-HT-SELEX
0.943 0.943
Irf4
M00175_2.00
Mus musculus
NNNYGAWASN

NSTWTCRNNN
PBM
Badis et al.(2009)
Irf4_3476
0.933 0.933
Irf4
M09243_2.00
Mus musculus
NDAWVVRGAASTGARAVH

DBTYTCASTTCYBBWTHN
Misc
Kulakovskiy et al.(2013)
IRF4_MOUSE.H11MO.0.A
0.933 0.933
IRF8
M03335_2.00
Homo sapiens
HCGAAACYGAAACY

RGTTTCRGTTTCGD
SELEX
Jolma et al.(2013)
IRF8_1
0.790 0.790
IRF8
M03336_2.00
Homo sapiens
HCGAAACCGAAACT

AGTTTCGGTTTCGD
SELEX
Jolma et al.(2013)
IRF8_2
0.790 0.790
IRF8
M05541_2.00
Homo sapiens
NYGAAASYGAAASHN

NDSTTTCRSTTTCRN
SELEX
Yin et al.(2017)
IRF8_eDBD_HT-SELEX
0.790 0.790
IRF8
M05543_2.00
Homo sapiens
NCGAAACYGAAACYN

NRGTTTCRGTTTCGN
SELEX
Yin et al.(2017)
IRF8_FL_HT-SELEX
0.790 0.790
IRF8
M09236_2.00
Homo sapiens
NDDDRRGGAASTGAAASYNN

NNRSTTTCASTTCCYYHHHN
Misc
Kulakovskiy et al.(2013)
IRF8_HUMAN.H11MO.0.B
0.790 0.790
Irf8
M09246_2.00
Mus musculus
NDDDRRGGAASTGAAASYNN

NNRSTTTCASTTCCYYHHHN
Misc
Kulakovskiy et al.(2013)
IRF8_MOUSE.H11MO.0.A
0.790 0.790
IRF8
M10890_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ICSBP_Q6
0.790 0.790
IRF8
M10891_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF8_Q6
0.790 0.790
IRF8
M05542_2.00
Homo sapiens
NYGAAASYGAAASYN

NRSTTTCRSTTTCRN
SELEX
Yin et al.(2017)
IRF8_eDBD_Methyl-HT-SELEX
0.790 0.790
IRF8
M05544_2.00
Homo sapiens
NYGAAASYGAAACYD

HRGTTTCRSTTTCRN
SELEX
Yin et al.(2017)
IRF8_FL_Methyl-HT-SELEX
0.790 0.790
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000011052 IRF 24 129

Links

Other IRF family TFs
Other Tetraodon nigroviridis TFs

150 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSP00000370343 Macaca fascicularis ENSP00000370343 I 0.983
irf4b Takifugu rubripes ENSTRUG00000002946 I 0.971
irf4b Gasterosteus aculeatus ENSGACG00000004966 I 0.971
ENSONIG00000006398 Oreochromis niloticus ENSONIG00000006398 I 0.971
ENSPFOG00000000657 Poecilia formosa ENSPFOG00000000657 I 0.971
ENSXMAG00000006246 Xiphophorus maculatus ENSXMAG00000006246 I 0.971
Tal_R010571 Tyto alba Tal_R010571 I 0.966
irf4b Oryzias latipes ENSORLG00000012712 I 0.962
IRF4 Monodelphis domestica ENSMODG00000008383 I 0.952
ENSSHAG00000015592 Sarcophilus harrisii ENSSHAG00000015592 I 0.952
ENSMEUG00000002440 Macropus eugenii ENSMEUG00000002440 I 0.952
IRF4 Echinops telfairi ENSETEG00000018472 I 0.943
IRF4 Gorilla gorilla ENSGGOG00000012342 I 0.943
ENSMPUG00000007848 Mustela putorius furo ENSMPUG00000007848 I 0.943
IRF4 Equus caballus ENSECAG00000016808 I 0.943
Irf4 Dipodomys ordii ENSDORG00000014895 I 0.943
IRF4 Macaca mulatta ENSMMUG00000018513 I 0.943
IRF4 Myotis lucifugus ENSMLUG00000010058 I 0.943
IRF4 Homo sapiens ENSG00000137265 D 0.943
ENSP00000370343-D1 Bos grunniens ENSP00000370343-D1 I 0.943
ENSLOCG00000013008 Lepisosteus oculatus ENSLOCG00000013008 I 0.943
IRF4 Felis catus ENSFCAG00000022941 I 0.943
IRF4 Loxodonta africana ENSLAFG00000017235 I 0.943
Brh_R000433 Buceros rhinoceros Brh_R000433 I 0.943
irf4b Danio rerio ENSDARG00000055374 I 0.943
IRF4 Bos taurus ENSBTAG00000002929 I 0.943
IRF4 Otolemur garnettii ENSOGAG00000014574 I 0.943
Pvit_05673 Pogona vitticeps Pvit_05673 I 0.943
IRF4 Ochotona princeps ENSOPRG00000012683 I 0.943
IRF4 Pteropus vampyrus ENSPVAG00000005078 I 0.943
ENSAMEG00000005976 Ailuropoda melanoleuca ENSAMEG00000005976 I 0.943
IRF4 Pan troglodytes ENSPTRG00000017656 I 0.943
IRF4 Cavia porcellus ENSCPOG00000003562 I 0.943
IRF4 Callithrix jacchus ENSCJAG00000019524 I 0.943
ENSOARG00000003822 Ovis aries ENSOARG00000003822 I 0.943
ENSPPYG00000016161 Pongo abelii ENSPPYG00000016161 I 0.943
ENSPSIG00000011619 Pelodiscus sinensis ENSPSIG00000011619 I 0.943
IRF4 Tupaia belangeri ENSTBEG00000012240 I 0.943
ENSCSAG00000007164 Chlorocebus sabaeus ENSCSAG00000007164 I 0.943
ENSNLEG00000010631 Nomascus leucogenys ENSNLEG00000010631 I 0.943
ENSSTOG00000011470 Ictidomys tridecemlineatus ENSSTOG00000011470 I 0.943
Aan_R012662 Calypte anna Aan_R012662 I 0.933
Irf4 Rattus norvegicus ENSRNOG00000061070 I 0.933
Irf4 Mus musculus ENSMUSG00000021356 D 0.933
IRF4 Taeniopygia guttata ENSTGUG00000002144 I 0.933
IRF4 Tursiops truncatus ENSTTRG00000001849 I 0.933
Afo_R014746 Aptenodytes forsteri Afo_R014746 I 0.933
Ogr05775 Ophisaurus gracilis Ogr05775 I 0.933
Cmyd_10011521 Chelonia mydas Cmyd_10011521 I 0.933
ENSAPLG00000014646 Anas platyrhynchos ENSAPLG00000014646 I 0.933
ENSAMXG00000006093 Astyanax mexicanus ENSAMXG00000006093 I 0.933
IRF4 Anolis carolinensis ENSACAG00000017711 I 0.933
ENSFALG00000013071 Ficedula albicollis ENSFALG00000013071 I 0.933
Gfo_R003357 Geospiza fortis Gfo_R003357 I 0.933
ENSGALG00000012830 Gallus gallus ENSGALG00000012830 I 0.933
Alligator_sinensis_CCG015622.1 Alligator sinensis Alligator_sinensis_CCG015622.1 I 0.933
ENSGMOG00000016994 Gadus morhua ENSGMOG00000016994 I 0.924
IRF4 Oryctolagus cuniculus ENSOCUG00000009374 I 0.924
irf4a Danio rerio ENSDARG00000006560 I 0.914
ENSAMXG00000016370 Astyanax mexicanus ENSAMXG00000016370 I 0.914
Myotis_brandtii_Irf4_10020370 Myotis brandtii Myotis_brandtii_Irf4_10020370 I 0.905
irf4 Xenopus tropicalis XB-GENE-988321 I 0.905
irf4a Oryzias latipes ENSORLG00000017242 I 0.876
ENSAMXG00000012775 Astyanax mexicanus ENSAMXG00000012775 I 0.876
ENSXMAG00000017015 Xiphophorus maculatus ENSXMAG00000017015 I 0.876
ENSPFOG00000015506 Poecilia formosa ENSPFOG00000015506 I 0.876
IRF4 Erinaceus europaeus ENSEEUG00000007703 I 0.876
irf4a Gasterosteus aculeatus ENSGACG00000016461 I 0.867
ENSGMOG00000005047 Gadus morhua ENSGMOG00000005047 I 0.867
ENSONIG00000009637 Oreochromis niloticus ENSONIG00000009637 I 0.857
irf4a Takifugu rubripes ENSTRUG00000011568 I 0.857
irf4a Tetraodon nigroviridis ENSTNIG00000005370 I 0.838
Cmyd_10021085 Chelonia mydas Cmyd_10021085 I 0.808
ENSPSIG00000011788 Pelodiscus sinensis ENSPSIG00000011788 I 0.808
Afo_R011419 Aptenodytes forsteri Afo_R011419 I 0.808
Tal_R007108 Tyto alba Tal_R007108 I 0.808
Alligator_sinensis_CCG008430.1 Alligator sinensis Alligator_sinensis_CCG008430.1 I 0.808
Pvit_16863 Pogona vitticeps Pvit_16863 I 0.800
IRF8 Gallus gallus ENSGALG00000005757 I 0.800
Brh_R009589 Buceros rhinoceros Brh_R009589 I 0.800
ENSFALG00000006647 Ficedula albicollis ENSFALG00000006647 I 0.798
ENSSHAG00000006901 Sarcophilus harrisii ENSSHAG00000006901 I 0.798
IRF8 Monodelphis domestica ENSMODG00000004572 I 0.798
Irf8 Rattus norvegicus ENSRNOG00000017869 I 0.790
ENSOARG00000011513 Ovis aries ENSOARG00000011513 I 0.790
Irf8 Mus musculus ENSMUSG00000041515 D 0.790
ENSP00000268638-D1 Bos grunniens ENSP00000268638-D1 I 0.790
IRF8 Bos taurus ENSBTAG00000017824 I 0.790
IRF8 Homo sapiens ENSG00000140968 D 0.790
IRF8 Anolis carolinensis ENSACAG00000005409 I 0.790
ENSMPUG00000008641 Mustela putorius furo ENSMPUG00000008641 I 0.790
Myotis_brandtii_IRF8_10035313 Myotis brandtii Myotis_brandtii_IRF8_10035313 I 0.788
IRF8 Pteropus vampyrus ENSPVAG00000003758 I 0.788
IRF8 Oryctolagus cuniculus ENSOCUG00000000536 I 0.788
IRF8 Canis familiaris ENSCAFG00000019919 I 0.788
ENSCPOG00000027266 Cavia porcellus ENSCPOG00000027266 I 0.788
ENSAMEG00000018268 Ailuropoda melanoleuca ENSAMEG00000018268 I 0.788
IRF8 Felis catus ENSFCAG00000007615 I 0.788
IRF8 Myotis lucifugus ENSMLUG00000005109 I 0.788
Aan_R009222 Calypte anna Aan_R009222 I 0.781
ENSCSAG00000003142 Chlorocebus sabaeus ENSCSAG00000003142 I 0.781
ENSP00000268638 Macaca fascicularis ENSP00000268638 I 0.781
IRF8 Macaca mulatta ENSMMUG00000008125 I 0.781
ENSNLEG00000011429 Nomascus leucogenys ENSNLEG00000011429 I 0.781
IRF8 Gorilla gorilla ENSGGOG00000028251 I 0.781
IRF8 Dasypus novemcinctus ENSDNOG00000038898 I 0.781
ENSSTOG00000028363 Ictidomys tridecemlineatus ENSSTOG00000028363 I 0.781
ENSLOCG00000001013 Lepisosteus oculatus ENSLOCG00000001013 I 0.781
ENSPANG00000024770 Papio anubis ENSPANG00000024770 I 0.781
IRF8 Pan troglodytes ENSPTRG00000008435 I 0.781
IRF8 Callithrix jacchus ENSCJAG00000017331 I 0.781
ENSPPYG00000007620 Pongo abelii ENSPPYG00000007620 I 0.781
IRF8 Otolemur garnettii ENSOGAG00000009262 I 0.781
irf8.L Xenopus laevis XB-GENE-985949 I 0.781
Ogr08841 Ophisaurus gracilis Ogr08841 I 0.775
ENSLACG00000005859 Latimeria chalumnae ENSLACG00000005859 I 0.771
IRF8 Erinaceus europaeus ENSEEUG00000002644 I 0.771
Gfo_R000501 Geospiza fortis Gfo_R000501 I 0.771
ENSLACG00000007228 Latimeria chalumnae ENSLACG00000007228 I 0.771
IRF8 Ochotona princeps ENSOPRG00000002139 I 0.771
IRF8 Ornithorhynchus anatinus ENSOANG00000003741 I 0.771
IRF8 Tupaia belangeri ENSTBEG00000013828 I 0.769
IRF8 Procavia capensis ENSPCAG00000004460 I 0.762
IRF8 Loxodonta africana ENSLAFG00000010973 I 0.762
ENSLOCG00000003532 Lepisosteus oculatus ENSLOCG00000003532 I 0.762
irf8 Danio rerio ENSDARG00000056407 I 0.743
ENSGMOG00000003945 Gadus morhua ENSGMOG00000003945 I 0.740
Afo_R010468 Aptenodytes forsteri Afo_R010468 I 0.737
irf10 Danio rerio ENSDARG00000027658 I 0.733
ENSXMAG00000003082 Xiphophorus maculatus ENSXMAG00000003082 I 0.733
ENSAMXG00000003452 Astyanax mexicanus ENSAMXG00000003452 I 0.733
irf8 Takifugu rubripes ENSTRUG00000018213 I 0.733
irf8 Oryzias latipes ENSORLG00000018216 I 0.724
ENSAMXG00000002697 Astyanax mexicanus ENSAMXG00000002697 I 0.724
ENSPFOG00000017639 Poecilia formosa ENSPFOG00000017639 I 0.724
ENSTGUG00000006609 Taeniopygia guttata ENSTGUG00000006609 I 0.724
ENSFALG00000005506 Ficedula albicollis ENSFALG00000005506 I 0.724
irf8 Tetraodon nigroviridis ENSTNIG00000009283 I 0.724
irf8 Gasterosteus aculeatus ENSGACG00000015958 I 0.714
ENSLACG00000004633 Latimeria chalumnae ENSLACG00000004633 I 0.714
ENSPSIG00000003518 Pelodiscus sinensis ENSPSIG00000003518 I 0.714
ENSGALG00000006448 Gallus gallus ENSGALG00000006448 I 0.714
ENSONIG00000005631 Oreochromis niloticus ENSONIG00000005631 I 0.714
ENSTNIG00000002469 Tetraodon nigroviridis ENSTNIG00000002469 I 0.714
irf9 Tetraodon nigroviridis ENSTNIG00000008698 I 0.714
ENSMODG00000019483 Monodelphis domestica ENSMODG00000019483 I 0.705
ENSAMXG00000004911 Astyanax mexicanus ENSAMXG00000004911 I 0.705
irf10 Tetraodon nigroviridis ENSTNIG00000012613 I 0.705
Ogr04948 Ophisaurus gracilis Ogr04948 N 0.705
irf9 Danio rerio ENSDARG00000016457 I 0.702