Gfo_R000501 (Geospiza fortis)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00605 (IRF) IPR001346 Gfo_R000501 T244548_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
IRF8
M03335_2.00
Homo sapiens
HCGAAACYGAAACY

RGTTTCRGTTTCGD
SELEX
Jolma et al.(2013)
IRF8_1
0.962 0.962
IRF8
M03336_2.00
Homo sapiens
HCGAAACCGAAACT

AGTTTCGGTTTCGD
SELEX
Jolma et al.(2013)
IRF8_2
0.962 0.962
IRF8
M05541_2.00
Homo sapiens
NYGAAASYGAAASHN

NDSTTTCRSTTTCRN
SELEX
Yin et al.(2017)
IRF8_eDBD_HT-SELEX
0.962 0.962
IRF8
M05543_2.00
Homo sapiens
NCGAAACYGAAACYN

NRGTTTCRGTTTCGN
SELEX
Yin et al.(2017)
IRF8_FL_HT-SELEX
0.962 0.962
IRF8
M09236_2.00
Homo sapiens
NDDDRRGGAASTGAAASYNN

NNRSTTTCASTTCCYYHHHN
Misc
Kulakovskiy et al.(2013)
IRF8_HUMAN.H11MO.0.B
0.962 0.962
IRF8
M10890_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ICSBP_Q6
0.962 0.962
IRF8
M10891_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF8_Q6
0.962 0.962
IRF8
M05542_2.00
Homo sapiens
NYGAAASYGAAASYN

NRSTTTCRSTTTCRN
SELEX
Yin et al.(2017)
IRF8_eDBD_Methyl-HT-SELEX
0.962 0.962
IRF8
M05544_2.00
Homo sapiens
NYGAAASYGAAACYD

HRGTTTCRSTTTCRN
SELEX
Yin et al.(2017)
IRF8_FL_Methyl-HT-SELEX
0.962 0.962
Irf8
M09246_2.00
Mus musculus
NDDDRRGGAASTGAAASYNN

NNRSTTTCASTTCCYYHHHN
Misc
Kulakovskiy et al.(2013)
IRF8_MOUSE.H11MO.0.A
0.942 0.942
Irf4
M00175_2.00
Mus musculus
NNNYGAWASN

NSTWTCRNNN
PBM
Badis et al.(2009)
Irf4_3476
0.798 0.798
IRF4
M03334_2.00
Homo sapiens
HCGAAACCGAAACYW

WRGTTTCGGTTTCGD
SELEX
Jolma et al.(2013)
IRF4_1
0.798 0.798
IRF4
M05539_2.00
Homo sapiens
NYGAAACYGAAACYN

NRGTTTCRGTTTCRN
SELEX
Yin et al.(2017)
IRF4_FL_HT-SELEX
0.798 0.798
IRF4
M07978_2.00
Homo sapiens
DNDVNNGWWVTGAVWVWN

NWBWBTCABWWCNNBHNH
ChIP-seq
Gerstein et al.(2012)
GM12878_IRF4_HudsonAlpha
0.798 0.798
IRF4
M09235_2.00
Homo sapiens
NDWDRRGGAASTGARAVH

DBTYTCASTTCCYYHWHN
Misc
Kulakovskiy et al.(2013)
IRF4_HUMAN.H11MO.0.A
0.798 0.798
Irf4
M09243_2.00
Mus musculus
NDAWVVRGAASTGARAVH

DBTYTCASTTCYBBWTHN
Misc
Kulakovskiy et al.(2013)
IRF4_MOUSE.H11MO.0.A
0.798 0.798
IRF4
M09595_2.00
Homo sapiens
HNYGAAASYD

HRSTTTCRND
Misc
Heinz et al.(2010)
GM12878-IRF4_GSE32465
0.798 0.798
IRF4
M10885_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF4_07
0.798 0.798
IRF4
M10886_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF4_08
0.798 0.798
IRF4
M10887_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF4_Q5_01
0.798 0.798
IRF4
M10888_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF4_Q5
0.798 0.798
IRF4
M10889_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF4_Q6
0.798 0.798
IRF4
M05540_2.00
Homo sapiens
NYGAAASYGAWASHN

NDSTWTCRSTTTCRN
SELEX
Yin et al.(2017)
IRF4_FL_Methyl-HT-SELEX
0.798 0.798
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R000501 IRF 9 113

Links

Other IRF family TFs
Other Geospiza fortis TFs

155 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ARB_01120 Arthroderma benhamiae ARB_01120 N 0.000
MCYG_02260 Arthroderma otae MCYG_02260 N 0.000
CADAFLAG00000474 Aspergillus flavus CADAFLAG00000474 N 0.000
CADANGAG00005435 Aspergillus niger CADANGAG00005435 N 0.000
CADAORAG00002457 Aspergillus oryzae CADAORAG00002457 N 0.000
EURHEDRAFT_512897 Aspergillus ruber EURHEDRAFT_512897 N 0.000
A1O1_02509 Capronia coronata A1O1_02509 N 0.000
A1O1_00801 Capronia coronata A1O1_00801 I 0.000
A1O3_00914 Capronia epimyces A1O3_00914 N 0.000
A1O3_02841 Capronia epimyces A1O3_02841 I 0.000
PV04_05279 Capronia semiimmersa PV04_05279 I 0.000
PV04_08823 Capronia semiimmersa PV04_08823 N 0.000
Z519_01916 Cladophialophora bantiana Z519_01916 N 0.000
Z519_12024 Cladophialophora bantiana Z519_12024 N 0.000
G647_04666 Cladophialophora carrionii G647_04666 I 0.000
G647_07244 Cladophialophora carrionii G647_07244 N 0.000
PV07_00882 Cladophialophora immunda PV07_00882 N 0.000
A1O5_01498 Cladophialophora psammophila A1O5_01498 N 0.000
A1O7_08287 Cladophialophora yegresii A1O7_08287 N 0.000
A1O7_04026 Cladophialophora yegresii A1O7_04026 I 0.000
CIMG_08163 Coccidioides immitis CIMG_08163 N 0.000
CPC735_021860 Coccidioides posadasii CPC735_021860 N 0.000
HMPREF1541_03654 Cyphellophora europaea HMPREF1541_03654 N 0.000
HMPREF1120_06404 Exophiala dermatitidis HMPREF1120_06404 N 0.000
HMPREF1120_02238 Exophiala dermatitidis HMPREF1120_02238 N 0.000
PV10_00514 Exophiala mesophila PV10_00514 I 0.000
PV10_04925 Exophiala mesophila PV10_04925 N 0.000
PV06_09822 Exophiala oligosperma PV06_09822 N 0.000
PV08_08880 Exophiala spinifera PV08_08880 N 0.000
PV05_01304 Exophiala xenobiotica PV05_01304 N 0.000
PV05_00997 Exophiala xenobiotica PV05_00997 N 0.000
Z517_11712 Fonsecaea pedrosoi Z517_11712 I 0.000
Z517_05164 Fonsecaea pedrosoi Z517_05164 N 0.000
MCYG_02260 Microsporum canis MCYG_02260 N 0.000
MGYG_07575 Microsporum gypseum MGYG_07575 N 0.000
PDE_02184 Penicillium oxalicum PDE_02184 N 0.000
PFICI_04450 Pestalotiopsis fici PFICI_04450 I 0.000
Z518_10184 Rhinocladiella mackenziei Z518_10184 I 0.000
Z518_10852 Rhinocladiella mackenziei Z518_10852 N 0.000
TEQG_07260 Trichophyton equinum TEQG_07260 N 0.000
H101_04104 Trichophyton interdigitale H101_04104 N 0.000
H102_03320 Trichophyton rubrum H102_03320 N 0.000
H105_03339 Trichophyton soudanense H105_03339 N 0.000
TESG_03991 Trichophyton tonsurans TESG_03991 N 0.000
TRV_02239 Trichophyton verrucosum TRV_02239 N 0.000
UREG_02425 Uncinocarpus reesii UREG_02425 N 0.000