Gfo_R005312 (Geospiza fortis)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00605 (IRF) IPR001346 Gfo_R005312 T244550_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
IRF8
M03335_2.00
Homo sapiens
HCGAAACYGAAACY

RGTTTCRGTTTCGD
SELEX
Jolma et al.(2013)
IRF8_1
0.772 0.772
IRF8
M03336_2.00
Homo sapiens
HCGAAACCGAAACT

AGTTTCGGTTTCGD
SELEX
Jolma et al.(2013)
IRF8_2
0.772 0.772
IRF8
M05541_2.00
Homo sapiens
NYGAAASYGAAASHN

NDSTTTCRSTTTCRN
SELEX
Yin et al.(2017)
IRF8_eDBD_HT-SELEX
0.772 0.772
IRF8
M05543_2.00
Homo sapiens
NCGAAACYGAAACYN

NRGTTTCRGTTTCGN
SELEX
Yin et al.(2017)
IRF8_FL_HT-SELEX
0.772 0.772
IRF8
M09236_2.00
Homo sapiens
NDDDRRGGAASTGAAASYNN

NNRSTTTCASTTCCYYHHHN
Misc
Kulakovskiy et al.(2013)
IRF8_HUMAN.H11MO.0.B
0.772 0.772
Irf8
M09246_2.00
Mus musculus
NDDDRRGGAASTGAAASYNN

NNRSTTTCASTTCCYYHHHN
Misc
Kulakovskiy et al.(2013)
IRF8_MOUSE.H11MO.0.A
0.772 0.772
IRF8
M10890_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ICSBP_Q6
0.772 0.772
IRF8
M10891_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF8_Q6
0.772 0.772
IRF8
M05542_2.00
Homo sapiens
NYGAAASYGAAASYN

NRSTTTCRSTTTCRN
SELEX
Yin et al.(2017)
IRF8_eDBD_Methyl-HT-SELEX
0.772 0.772
IRF8
M05544_2.00
Homo sapiens
NYGAAASYGAAACYD

HRGTTTCRSTTTCRN
SELEX
Yin et al.(2017)
IRF8_FL_Methyl-HT-SELEX
0.772 0.772
Irf4
M00175_2.00
Mus musculus
NNNYGAWASN

NSTWTCRNNN
PBM
Badis et al.(2009)
Irf4_3476
0.754 0.754
IRF4
M03334_2.00
Homo sapiens
HCGAAACCGAAACYW

WRGTTTCGGTTTCGD
SELEX
Jolma et al.(2013)
IRF4_1
0.754 0.754
IRF4
M05539_2.00
Homo sapiens
NYGAAACYGAAACYN

NRGTTTCRGTTTCRN
SELEX
Yin et al.(2017)
IRF4_FL_HT-SELEX
0.754 0.754
IRF4
M07978_2.00
Homo sapiens
DNDVNNGWWVTGAVWVWN

NWBWBTCABWWCNNBHNH
ChIP-seq
Gerstein et al.(2012)
GM12878_IRF4_HudsonAlpha
0.754 0.754
IRF4
M09235_2.00
Homo sapiens
NDWDRRGGAASTGARAVH

DBTYTCASTTCCYYHWHN
Misc
Kulakovskiy et al.(2013)
IRF4_HUMAN.H11MO.0.A
0.754 0.754
Irf4
M09243_2.00
Mus musculus
NDAWVVRGAASTGARAVH

DBTYTCASTTCYBBWTHN
Misc
Kulakovskiy et al.(2013)
IRF4_MOUSE.H11MO.0.A
0.754 0.754
IRF4
M09595_2.00
Homo sapiens
HNYGAAASYD

HRSTTTCRND
Misc
Heinz et al.(2010)
GM12878-IRF4_GSE32465
0.754 0.754
IRF4
M10885_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF4_07
0.754 0.754
IRF4
M10886_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF4_08
0.754 0.754
IRF4
M10887_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF4_Q5_01
0.754 0.754
IRF4
M10888_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF4_Q5
0.754 0.754
IRF4
M10889_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF4_Q6
0.754 0.754
IRF4
M05540_2.00
Homo sapiens
NYGAAASYGAWASHN

NDSTWTCRSTTTCRN
SELEX
Yin et al.(2017)
IRF4_FL_Methyl-HT-SELEX
0.754 0.754
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R005312 IRF 1 57

Links

Other IRF family TFs
Other Geospiza fortis TFs

91 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000013647 Ailuropoda melanoleuca ENSAMEG00000013647 I 0.737
Alligator_sinensis_CCG000346.1 Alligator sinensis Alligator_sinensis_CCG000346.1 N 0.947
Alligator_sinensis_CCG015622.1 Alligator sinensis Alligator_sinensis_CCG015622.1 I 0.754
ENSAPLG00000014646 Anas platyrhynchos ENSAPLG00000014646 I 0.754
Afo_R010468 Aptenodytes forsteri Afo_R010468 I 0.982
Afo_R014746 Aptenodytes forsteri Afo_R014746 I 0.754
ENSAMXG00000012775 Astyanax mexicanus ENSAMXG00000012775 I 0.719
ENSAMXG00000016370 Astyanax mexicanus ENSAMXG00000016370 I 0.754
ENSAMXG00000006093 Astyanax mexicanus ENSAMXG00000006093 I 0.772
ENSAMXG00000003452 Astyanax mexicanus ENSAMXG00000003452 I 0.789
ENSP00000268638-D1 Bos grunniens ENSP00000268638-D1 I 0.772
IRF8 Bos taurus ENSBTAG00000017824 I 0.772
Aan_R015695 Calypte anna Aan_R015695 I 0.947
Aan_R012662 Calypte anna Aan_R012662 I 0.754
ENSCAFG00000007099 Canis familiaris ENSCAFG00000007099 I 0.789
Cmyd_10011521 Chelonia mydas Cmyd_10011521 I 0.754
Cmyd_10009547 Chelonia mydas Cmyd_10009547 I 0.862
ENSCSAG00000003142 Chlorocebus sabaeus ENSCSAG00000003142 I 0.772
IRF4 Choloepus hoffmanni ENSCHOG00000012417 I 0.754
irf8 Danio rerio ENSDARG00000056407 I 0.789
ENSDNOG00000030863 Dasypus novemcinctus ENSDNOG00000030863 N 0.754
IRF8 Equus caballus ENSECAG00000015449 I 0.789
IRF8 Erinaceus europaeus ENSEEUG00000002644 I 0.754
ENSFALG00000005506 Ficedula albicollis ENSFALG00000005506 I 0.965
ENSFALG00000013071 Ficedula albicollis ENSFALG00000013071 I 0.754
ENSGMOG00000002737 Gadus morhua ENSGMOG00000002737 N 0.754
IRF8 Gallus gallus ENSGALG00000005757 I 0.772
ENSGALG00000012830 Gallus gallus ENSGALG00000012830 I 0.754
irf4b Gasterosteus aculeatus ENSGACG00000004966 I 0.719
irf10 Gasterosteus aculeatus ENSGACG00000015123 I 0.789
irf4a Gasterosteus aculeatus ENSGACG00000016461 I 0.719
Gfo_R003357 Geospiza fortis Gfo_R003357 I 0.754
IRF8 Gorilla gorilla ENSGGOG00000028251 I 0.772
IRF8 Homo sapiens ENSG00000140968 D 0.772
ENSLACG00000007228 Latimeria chalumnae ENSLACG00000007228 I 0.912
ENSLOCG00000001013 Lepisosteus oculatus ENSLOCG00000001013 I 0.772
ENSLOCG00000003532 Lepisosteus oculatus ENSLOCG00000003532 I 0.877
ENSP00000370343 Macaca fascicularis ENSP00000370343 I 0.729
ENSP00000268638 Macaca fascicularis ENSP00000268638 I 0.772
IRF8 Macaca mulatta ENSMMUG00000008125 I 0.772
ENSMICG00000011721 Microcebus murinus ENSMICG00000011721 I 0.754
ENSMODG00000019483 Monodelphis domestica ENSMODG00000019483 I 0.895
ENSMPUG00000008641 Mustela putorius furo ENSMPUG00000008641 I 0.772
Irf4 Mus musculus ENSMUSG00000021356 D 0.754
Irf8 Mus musculus ENSMUSG00000041515 D 0.772
Myotis_brandtii_Irf4_10020370 Myotis brandtii Myotis_brandtii_Irf4_10020370 I 0.702
ENSNLEG00000011429 Nomascus leucogenys ENSNLEG00000011429 I 0.772
IRF8 Ochotona princeps ENSOPRG00000002139 I 0.772
Ogr04948 Ophisaurus gracilis Ogr04948 N 0.825
Ogr05775 Ophisaurus gracilis Ogr05775 I 0.754
ENSONIG00000009637 Oreochromis niloticus ENSONIG00000009637 I 0.772
IRF8 Ornithorhynchus anatinus ENSOANG00000003741 I 0.772
IRF4 Ornithorhynchus anatinus ENSOANG00000006326 I 0.705
IRF4 Oryctolagus cuniculus ENSOCUG00000009374 I 0.754
irf4b Oryzias latipes ENSORLG00000012712 I 0.737
irf10 Oryzias latipes ENSORLG00000011745 N 0.825
irf8 Oryzias latipes ENSORLG00000018216 I 0.789
irf4a Oryzias latipes ENSORLG00000017242 I 0.754
IRF8 Otolemur garnettii ENSOGAG00000009262 I 0.772
ENSOARG00000011513 Ovis aries ENSOARG00000011513 I 0.772
IRF8 Pan troglodytes ENSPTRG00000008435 I 0.772
ENSPANG00000024770 Papio anubis ENSPANG00000024770 I 0.772
ENSPANG00000023389 Papio anubis ENSPANG00000023389 I 0.772
ENSPSIG00000003518 Pelodiscus sinensis ENSPSIG00000003518 I 0.911
ENSPFOG00000017639 Poecilia formosa ENSPFOG00000017639 I 0.789
ENSPFOG00000009490 Poecilia formosa ENSPFOG00000009490 N 0.807
ENSPFOG00000015506 Poecilia formosa ENSPFOG00000015506 I 0.754
Pvit_16863 Pogona vitticeps Pvit_16863 I 0.789
ENSPPYG00000007620 Pongo abelii ENSPPYG00000007620 I 0.772
IRF8 Procavia capensis ENSPCAG00000004460 I 0.789
Irf8 Rattus norvegicus ENSRNOG00000017869 I 0.772
Irf4 Rattus norvegicus ENSRNOG00000061070 I 0.754
ENSSSCG00000022547 Sus scrofa ENSSSCG00000022547 I 0.807
ENSSSCG00000023184 Sus scrofa ENSSSCG00000023184 I 0.772
ENSTGUG00000006609 Taeniopygia guttata ENSTGUG00000006609 I 0.982
IRF4 Taeniopygia guttata ENSTGUG00000002144 I 0.754
irf10 Takifugu rubripes ENSTRUG00000002917 I 0.789
irf4b Takifugu rubripes ENSTRUG00000002946 I 0.754
irf8 Takifugu rubripes ENSTRUG00000018213 I 0.789
ENSTSYG00000006495 Tarsius syrichta ENSTSYG00000006495 I 0.754
irf10 Tetraodon nigroviridis ENSTNIG00000012613 I 0.772
irf8 Tetraodon nigroviridis ENSTNIG00000009283 I 0.789
irf4a Tetraodon nigroviridis ENSTNIG00000005370 I 0.772
IRF8 Tursiops truncatus ENSTTRG00000016024 I 0.772
IRF4 Tursiops truncatus ENSTTRG00000001849 I 0.772
Tal_R010571 Tyto alba Tal_R010571 I 0.759
irf8.L Xenopus laevis XB-GENE-985949 I 0.789
irf10 Xenopus tropicalis XB-GENE-1033046 I 0.719
irf4 Xenopus tropicalis XB-GENE-988321 I 0.754
XP_002934991 Xenopus tropicalis XP_002934991 I 0.772
ENSXMAG00000017015 Xiphophorus maculatus ENSXMAG00000017015 I 0.754