CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ogr12956
(
Ophisaurus gracilis
)
IRF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00605 (IRF)
IPR001346
Ogr12956
T244570_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
IRF6
M02254_2.00
Meleagris gallopavo
NRNCGAWACY
RGTWTCGNYN
PBM
Weirauch et al.(2014)
pTH9210
0.957
0.957
IRF6
M02253_2.00
Gallus gallus
NNMCNAAWNN
NNWTTNGKNN
PBM
Weirauch et al.(2014)
pTH9178
0.946
0.946
Irf6
M00176_2.00
Mus musculus
NNNHGADASN
NSTHTCDNNN
PBM
Badis et al.(2009)
Irf6_3803
0.935
0.935
IRF6
M05527_2.00
Homo sapiens
RGTWTCGNNNNNNYGAWACY
RGTWTCRNNNNNNCGAWACY
SELEX
Yin et al.(2017)
IRF6_eDBD_HT-SELEX
0.935
0.935
IRF6
M05529_2.00
Homo sapiens
ACCGAAACT
AGTTTCGGT
SELEX
Yin et al.(2017)
IRF6_FL_HT-SELEX
0.935
0.935
IRF6
M05528_2.00
Homo sapiens
RGTWTCGNHNNDNYGAWACY
RGTWTCRNHNNDNCGAWACY
SELEX
Yin et al.(2017)
IRF6_eDBD_Methyl-HT-SELEX
0.935
0.935
IRF6
M05530_2.00
Homo sapiens
ACCGAWACY
RGTWTCGGT
SELEX
Yin et al.(2017)
IRF6_FL_Methyl-HT-SELEX
0.935
0.935
irf6.2
M02259_2.00
Xenopus tropicalis
NVNHGAWACH
DGTWTCDNBN
PBM
Weirauch et al.(2014)
pTH9302
0.924
0.924
irf5.L
M02260_2.00
Xenopus laevis
VNCGADACHN
NDGTHTCGNB
PBM
Weirauch et al.(2014)
pTH9367
0.750
0.750
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ogr12956
IRF
1
93
MYPGLVWLNRDAKRFQIPWKHATRHSPQHEEENTIFKAWAVETGKYQEGVDDPDPAKWKAQLRCALNKSREFNLMYDGTKEVPMNPIKIYEVC
Links
Other
IRF
family TFs
Other
Ophisaurus gracilis
TFs
79 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy