CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Sakowv30022795m.g
(
Saccoglossus kowalevskii
)
IRF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00605 (IRF)
IPR001346
Sakowv30022795m.g
T244610_2.00
JGI:Metazome (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
IRF2
M05545_2.00
Homo sapiens
NGAAAVYGAAAS
STTTCRBTTTCN
SELEX
Yin et al.(2017)
IRF2_FL_HT-SELEX
0.724
0.724
IRF2
M02691_2.00
Homo sapiens
SGAAAGYGAAASYNWWHH
DDWWNRSTTTCRCTTTCS
SELEX
Mathelier et al.(2014)
MA0051.1
0.724
0.724
IRF2
M09237_2.00
Homo sapiens
NRAANNGAAASYGAAASYRV
BYRSTTTCRSTTTCNNTTYN
Misc
Kulakovskiy et al.(2013)
IRF2_HUMAN.H11MO.0.A
0.724
0.724
IRF2
M09596_2.00
Homo sapiens
NRAAVNRRAASB
VSTTYYNBTTYN
Misc
Heinz et al.(2010)
Erythroblas-IRF2_GSE36985
0.724
0.724
IRF2
M10892_2.00
Homo sapiens
GAAAAGYGAAASY
RSTTTCRCTTTTC
Transfac
Matys et al.(2006)
V$IRF2_01
0.724
0.724
IRF2
M10893_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF2_Q6
0.724
0.724
IRF2
M05546_2.00
Homo sapiens
NGAAASYGAAAS
STTTCRSTTTCN
SELEX
Yin et al.(2017)
IRF2_FL_Methyl-HT-SELEX
0.724
0.724
Irf2
M00805_2.00
Mus musculus
NDWNHGAAAV
BTTTCDNWHN
PBM
Weirauch et al.(2013)
pTH2835
0.714
0.714
Irf2
M09245_2.00
Mus musculus
NRAANNGAAASYGAAASYRV
BYRSTTTCRSTTTCNNTTYN
Misc
Kulakovskiy et al.(2013)
IRF2_MOUSE.H11MO.0.B
0.714
0.714
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
23952096_peptide
IRF
53
159
RMRPWLEQQLTSETIPGLKWFDKEKGLFKIPWKHAARHGWDKDRDACLFMHWAIHTGKYSLSKGDKPRPKTWKANFRCALNSLPDIQEEPSKSIRKGNNAFKVYRLL
Links
Other
IRF
family TFs
Other
Saccoglossus kowalevskii
TFs
53 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy