Al_scaffold_0004_3226 (Arabidopsis lyrata)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Al_scaffold_0004_3226 T244835_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.960 0.960
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.960 0.960
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.717 0.717
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.717 0.717
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.707 0.707
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0004_3226 LOB 17 116

Links

Other LOB family TFs
Other Arabidopsis lyrata TFs

132 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.970
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.960
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.960
LBD19 Arabidopsis thaliana AT2G45410 D 0.960
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.899
Bo4g024610 Brassica oleracea Bo4g024610 I 0.889
Bra004908 Brassica rapa Bra004908 I 0.879
Bra040312 Brassica rapa Bra040312 I 0.869
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.838
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.838
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.828
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.828
PK25573.1 Cannabis sativa PK25573.1 I 0.828
Pm017935 Prunus mume Pm017935 I 0.818
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.818
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.818
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.818
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.818
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.818
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.818
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.818
MDP0000429067 Malus domestica MDP0000429067 I 0.808
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.808
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.808
30174.m008897 Ricinus communis 30174.m008897 I 0.808
TCM_005497 Theobroma cacao TCM_005497 I 0.798
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.798
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.798
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.798
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.798
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.788
mgf020735m Mimulus guttatus mgf020735m I 0.788
Ca_19598 Cicer arietinum Ca_19598 I 0.788
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.778
LBD31 Arabidopsis thaliana AT4G00210 I 0.778
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.778
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.778
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.768
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.768
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.768
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.768
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.768
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.768
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.768
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.768
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.768
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.768
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.768
30174.m008898 Ricinus communis 30174.m008898 I 0.768
Cla007069 Citrullus lanatus Cla007069 I 0.768
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.768
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.768
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.766
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.758
Pm017936 Prunus mume Pm017936 I 0.758
Cla007068 Citrullus lanatus Cla007068 I 0.758
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.758
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.758
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.758
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.758
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.758
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.758
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.758
Bo4g195510 Brassica oleracea Bo4g195510 I 0.758
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.758
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.758
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.758
OBART03G10450 Oryza barthii OBART03G10450 I 0.758
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.758
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.758
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.758
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.758
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.758
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.758
OS03G0246900 Oryza sativa OS03G0246900 I 0.758
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.747
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.747
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.747
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.747
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.747
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.747
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.747
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.737
OB10G12360 Oryza brachyantha OB10G12360 I 0.737
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.737
Bra040311 Brassica rapa Bra040311 I 0.727
Bo4g195520 Brassica oleracea Bo4g195520 I 0.727
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.727
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.727
Ca_20428 Cicer arietinum Ca_20428 I 0.727
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.727
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.727
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.727
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.723
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.717
Bra037323 Brassica rapa Bra037323 I 0.717
Bra037322 Brassica rapa Bra037322 I 0.717
Bo9g002160 Brassica oleracea Bo9g002160 I 0.717
LBD18 Arabidopsis thaliana AT2G45420 D 0.717
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.717
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.717
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.717
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.717
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.717
Bo9g002150 Brassica oleracea Bo9g002150 I 0.717
Bo4g024620 Brassica oleracea Bo4g024620 I 0.717
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.717
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.717
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.717
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.717
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.717
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.717
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.717
OS10G0162600 Oryza sativa OS10G0162600 I 0.717
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.717
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.717
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.717
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.717
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.717
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.707
LBD30 Arabidopsis thaliana AT4G00220 D 0.707
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.707
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.707
Cla002965 Citrullus lanatus Cla002965 I 0.707
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.707
Bra008514 Brassica rapa Bra008514 I 0.707
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.707
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.707
Bra004910 Brassica rapa Bra004910 I 0.707
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.707
Bo2g097560 Brassica oleracea Bo2g097560 I 0.707
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.707