AMTR_s00083p00067130 (Amborella trichopoda)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 AMTR_s00083p00067130 T244855_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.903 0.903
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN02517 LOB 1 31

Links

Other LOB family TFs
Other Amborella trichopoda TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.935
OB01G14220 Oryza brachyantha OB01G14220 I 0.935
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.935
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.935
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.935
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.935
Si002632m.g Setaria italica Si002632m.g I 0.935
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.935
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.935
Cla010600 Citrullus lanatus Cla010600 I 0.903
MDP0000848210 Malus domestica MDP0000848210 I 0.903
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.903
Ca_24372 Cicer arietinum Ca_24372 I 0.903
F775_25656 Aegilops tauschii F775_25656 I 0.903
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.871
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.871
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.871
mgf024603m Mimulus guttatus mgf024603m I 0.871
30147.m013890 Ricinus communis 30147.m013890 I 0.871
Cla017388 Citrullus lanatus Cla017388 I 0.871
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.871
LOB Vitis vinifera VIT_17s0000g09010 I 0.871
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.871
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.871
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.871
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.839
Ca_07463 Cicer arietinum Ca_07463 I 0.839
LBD25 Arabidopsis thaliana AT3G27650 I 0.806
mgf003146m Mimulus guttatus mgf003146m I 0.806
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.806
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.806
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.806
Bra033019 Brassica rapa Bra033019 I 0.742
Bo2g144870 Brassica oleracea Bo2g144870 I 0.742