APUM5 (Arabidopsis thaliana)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 AT3G20250 T244889_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G20250.1 LOB 600 688
AT3G20250.2 LOB 636 724
AT3G20250.3 LOB 636 724

Links

Other LOB family TFs
Other Arabidopsis thaliana TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
APUM5 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001929 N 1.000
Bo5g109920 Brassica oleracea Bo5g109920 N 0.888
Thhalv10020002m.g Eutrema salsugineum Thhalv10020002m.g N 0.888
Bo3g074810 Brassica oleracea Bo3g074810 N 0.888
Bra035800 Brassica rapa Bra035800 N 0.888
Carubv10012910m.g Capsella rubella Carubv10012910m.g N 0.764
Cagra.0316s0041 Capsella grandiflora Cagra.0316s0041 N 0.753
SELMODRAFT_78497 Selaginella moellendorffii SELMODRAFT_78497 N 0.725