LBD25 (Arabidopsis thaliana)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 AT3G27650 T244892_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.808 0.808
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G27650.1 LOB 39 137

Links

Other LOB family TFs
Other Arabidopsis thaliana TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.990
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.990
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.990
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.990
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.980
Bra039072 Brassica rapa Bra039072 I 0.970
Bo9g008330 Brassica oleracea Bo9g008330 I 0.970
Bra025294 Brassica rapa Bra025294 I 0.970
Bo2g144870 Brassica oleracea Bo2g144870 I 0.949
Bra033019 Brassica rapa Bra033019 I 0.949
Bo7g085860 Brassica oleracea Bo7g085860 I 0.939
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.889
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.889
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.879
TCM_016952 Theobroma cacao TCM_016952 I 0.879
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.879
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.879
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.879
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.879
MDP0000848210 Malus domestica MDP0000848210 I 0.879
Pm015649 Prunus mume Pm015649 I 0.869
29917.m001993 Ricinus communis 29917.m001993 I 0.869
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.869
Cla010600 Citrullus lanatus Cla010600 I 0.869
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.869
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.869
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.869
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.869
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.869
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.869
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.869
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.869
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.869
PK26472.1 Cannabis sativa PK26472.1 I 0.869
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.869
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.859
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.859
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.859
Ca_24372 Cicer arietinum Ca_24372 I 0.859
Cla017388 Citrullus lanatus Cla017388 I 0.859
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.859
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.859
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.848
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.838
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.838
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.838
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.828
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.828
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.828
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.818
mgf003146m Mimulus guttatus mgf003146m I 0.818
30147.m013890 Ricinus communis 30147.m013890 I 0.818
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.818
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.808
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.808
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.808
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.808
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.808
OBART01G04470 Oryza barthii OBART01G04470 I 0.808
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.808
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.808
Ca_07463 Cicer arietinum Ca_07463 I 0.808
LOB Vitis vinifera VIT_17s0000g09010 I 0.808
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.808
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.808
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.808
Cla019510 Citrullus lanatus Cla019510 I 0.808
Bo3g104760 Brassica oleracea Bo3g104760 I 0.808
mgf024603m Mimulus guttatus mgf024603m I 0.808
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.808
MDP0000130659 Malus domestica MDP0000130659 I 0.808
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.808
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.808
Bra038606 Brassica rapa Bra038606 I 0.808
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.808
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.808
MDP0000254288 Malus domestica MDP0000254288 I 0.808
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.808
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.808
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.808
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.808
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.808
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.808
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.808
Pm024312 Prunus mume Pm024312 I 0.808
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.808
Si002632m.g Setaria italica Si002632m.g I 0.808
OB01G14220 Oryza brachyantha OB01G14220 I 0.808
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.808
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.808
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.808
TCM_012190 Theobroma cacao TCM_012190 I 0.808
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.808
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.808
LOB Arabidopsis lyrata scaffold_802995.1 I 0.808
OS01G0169400 Oryza sativa OS01G0169400 I 0.808
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.808
LOB Arabidopsis thaliana AT5G63090 D 0.808
AMTR_s00083p00067130 Amborella trichopoda AMTR_s00083p00067130 I 0.806
Ca_08824 Cicer arietinum Ca_08824 I 0.798
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.798
Bo9g017470 Brassica oleracea Bo9g017470 I 0.798
F775_25656 Aegilops tauschii F775_25656 I 0.798
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.798
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.798
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.788
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.788
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.788
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.788
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.788
F775_33210 Aegilops tauschii F775_33210 I 0.781
Bra035860 Brassica rapa Bra035860 I 0.778
PK21510.1 Cannabis sativa PK21510.1 I 0.778
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.778
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.778
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.778
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.778
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.778
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.778
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.778
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.778
mgf016361m Mimulus guttatus mgf016361m I 0.768
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.759
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.758
Cla003499 Citrullus lanatus Cla003499 I 0.758
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.758
PK18922.1 Cannabis sativa PK18922.1 I 0.754
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.754
BGIOSGA002306 Oryza indica BGIOSGA002306 I 0.754
PK29334.1 Cannabis sativa PK29334.1 I 0.750
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.747
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.747
PK13228.1 Cannabis sativa PK13228.1 I 0.734
GSMUA_Achr7G23710_001 Musa acuminata GSMUA_Achr7G23710_001 I 0.733
TRIUR3_10339 Triticum urartu TRIUR3_10339 I 0.729
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.727
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.727
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.717
AS2 Vitis vinifera VIT_00s0340g00090 I 0.717
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.717
Ca_20200 Cicer arietinum Ca_20200 I 0.717
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.717
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.717
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.717
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.717
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.717
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.707
MDP0000643326 Malus domestica MDP0000643326 I 0.707
Lus10001139.g Linum usitatissimum Lus10001139.g I 0.707
MDP0000273432 Malus domestica MDP0000273432 I 0.707
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.707
Si036905m.g Setaria italica Si036905m.g I 0.707
Si024114m.g Setaria italica Si024114m.g I 0.707
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.707
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.707
Cla005851 Citrullus lanatus Cla005851 I 0.707
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.707
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.707
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.707
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.707
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.707
OS05G0417000 Oryza sativa OS05G0417000 I 0.707
OB05G24560 Oryza brachyantha OB05G24560 I 0.707
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.707
Pm026450 Prunus mume Pm026450 I 0.707
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.707
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.707
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.707
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.707
F775_21760 Aegilops tauschii F775_21760 I 0.707
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.707
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.707
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.707
mgf014755m Mimulus guttatus mgf014755m I 0.707
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.707
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.707
PK17019.1 Cannabis sativa PK17019.1 I 0.706
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.702
GLYMA01G32340 Glycine max GLYMA01G32340 N 0.701