TF Information

LBD30 *(Arabidopsis thaliana)* LOB
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03195 (DUF260)	IPR004883	AT4G00220	T244899_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
LBD30 M01066_2.00	Arabidopsis thaliana	BVWWWHVNGG	CCNBDWWWBV	PBM Sullivan et al.(2014) pTH7467	(Direct)	(Direct)
LBD30 M01067_2.00	Arabidopsis thaliana	VWWWNVNGGD	HCCNBNWWWB	PBM Sullivan et al.(2014) pTH7616	(Direct)	(Direct)
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
LBD18 M06962_2.00	Arabidopsis thaliana	SCGGRRAWHVHGSMRNNDN	NHNNYKSCDBDWTYYCCGS	Dap-seq OMalley et al.(2016) LBD18_col_a	0.828	0.828
LBD18 M06963_2.00	Arabidopsis thaliana	CDBDWTTTMHGSHRN	NYDSCDKAAAWHVHG	Dap-seq OMalley et al.(2016) LBD18_colamp_a	0.828	0.828
LBD16 M00870_2.00	Arabidopsis thaliana	DNHHYVCGG	CCGBRDDNH	PBM Franco-Zorrilla et al.(2014) LBD16	0.727	0.727
LBD16 M06958_2.00	Arabidopsis thaliana	SCGGAAAWNVCGSMR	YKSCGBNWTTTCCGS	Dap-seq OMalley et al.(2016) ASL18_col_a	0.727	0.727
LBD16 M06959_2.00	Arabidopsis thaliana	SCDBDWTTYVCGSHDN	NHDSCGBRAAWHVHGS	Dap-seq OMalley et al.(2016) ASL18_colamp_a	0.727	0.727
LBD19 M06960_2.00	Arabidopsis thaliana	CCKKAAAWHMMGSND	HNSCKKDWTTTMMGG	Dap-seq OMalley et al.(2016) LBD19_col_a	0.707	0.707
LBD19 M06961_2.00	Arabidopsis thaliana	WWYCCGG	CCGGRWW	Dap-seq OMalley et al.(2016) LBD19_colamp_a	0.707	0.707
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

Experimental Constructs

Motif ID	Domain	From	To	Sequence
M01066_2.00	LOB	17	116	PCGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLHHVPEHKRPDAVVSICFEAQARLRDPIYGCVSHIVSLQQQVVSLQTELSYLQA
M01067_2.00	LOB	17	116	PCGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLHHVPEHKRPDAVVSICFEAQARLRDPIYGCVSHIVSLQQQVVSLQTELSYLQA

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
AT4G00220.1	LOB	17	116	PCGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLHHVPEHKRPDAVVSICFEAQARLRDPIYGCVSHIVSLQQQVVSLQTELSYLQA

Links
Other LOB family TFs
Other *Arabidopsis thaliana* TFs

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307 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action