BGIOSGA011445 (Oryza indica)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 BGIOSGA011445 T244930_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.758 0.758
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.758 0.758
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG

CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.747 0.747
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG

CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.747 0.747
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD

HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.747 0.747
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR

YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.747 0.747
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN

NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.747 0.747
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BGIOSGA011445-PA LOB 7 106

Links

Other LOB family TFs
Other Oryza indica TFs

367 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30178.m000863 Ricinus communis 30178.m000863 N 0.000
AT4G12850 Arabidopsis thaliana AT4G12850 N 0.000
Bostr.2021s0020 Boechera stricta Bostr.2021s0020 N 0.000
Ca_17053 Cicer arietinum Ca_17053 N 0.000
Ciclev10016721m.g Citrus clementina Ciclev10016721m.g N 0.000
Cucsa.388460 Cucumis sativus Cucsa.388460 N 0.000
Eucgr.H00706 Eucalyptus grandis Eucgr.H00706 N 0.000
evm.TU.supercontig_8.54 Carica papaya evm.TU.supercontig_8.54 N 0.000
fgenesh2_kg.9__81__AT4G12850.1 Arabidopsis lyrata fgenesh2_kg.9__81__AT4G12850.1 N 0.000
GLYMA08G45680 Glycine max GLYMA08G45680 N 0.000
GLYMA18G24443 Glycine max GLYMA18G24443 N 0.000
Gorai.001G227800 Gossypium raimondii Gorai.001G227800 N 0.000
mgf019147m Mimulus guttatus mgf019147m N 0.000
orange1.1g030575m.g Citrus sinensis orange1.1g030575m.g N 0.000
PK01836.1 Cannabis sativa PK01836.1 N 0.000
POPTR_0002s24040 Populus trichocarpa POPTR_0002s24040 N 0.000
POPTR_0014s17510 Populus trichocarpa POPTR_0014s17510 N 0.000
PRUPE_ppa019053mg Prunus persica PRUPE_ppa019053mg N 0.000
SapurV1A.0071s0660 Salix purpurea SapurV1A.0071s0660 N 0.000
TCM_002653 Theobroma cacao TCM_002653 N 0.000