CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BGIOSGA018905
(
Oryza indica
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
BGIOSGA018905
T244940_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.702
0.702
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
BGIOSGA018905-PA
LOB
9
65
PSWLQELPEEQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNDLKAQLARAHA
Links
Other
LOB
family TFs
Other
Oryza indica
TFs
122 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
OS05G0123000
Oryza sativa
OS05G0123000
I
1.000
ORUFI05G01750
Oryza rufipogon
ORUFI05G01750
I
1.000
OB05G11740
Oryza brachyantha
OB05G11740
I
0.947
OMERI05G01730
Oryza meridionalis
OMERI05G01730
N
0.933
OPUNC05G01600
Oryza punctata
OPUNC05G01600
N
0.932
ONIVA05G01850
Oryza nivara
ONIVA05G01850
I
0.912
Sb09g002190
Sorghum bicolor
Sb09g002190
I
0.895
cassava40961.m1
Manihot esculenta
cassava40961.m1
I
0.860
PGSC0003DMG400025400
Solanum tuberosum
PGSC0003DMG400025400
I
0.846
POPTR_0010s22470
Populus trichocarpa
POPTR_0010s22470
I
0.842
SapurV1A.0038s0110
Salix purpurea
SapurV1A.0038s0110
I
0.842
SapurV1A.0023s0430
Salix purpurea
SapurV1A.0023s0430
I
0.842
Gorai.004G012800
Gossypium raimondii
Gorai.004G012800
I
0.842
Solyc06g005090.2
Solanum lycopersicum
Solyc06g005090.2
I
0.825
PRUPE_ppa011528mg
Prunus persica
PRUPE_ppa011528mg
I
0.825
TCM_043081
Theobroma cacao
TCM_043081
I
0.825
AC214648.3_FG005
Zea mays
AC214648.3_FG005
I
0.825
cassava11218.m1
Manihot esculenta
cassava11218.m1
I
0.825
Ca_04287
Cicer arietinum
Ca_04287
I
0.825
Gorai.006G120900
Gossypium raimondii
Gorai.006G120900
I
0.825
MTR_1g095850
Medicago truncatula
MTR_1g095850
I
0.825
cassava819.valid.m1
Manihot esculenta
cassava819.valid.m1
I
0.825
POPTR_0008s04350
Populus trichocarpa
POPTR_0008s04350
I
0.825
MDP0000123013
Malus domestica
MDP0000123013
I
0.807
MDP0000151784
Malus domestica
MDP0000151784
I
0.807
PDK_20s1376911g004
Phoenix dactylifera
PDK_20s1376911g004
I
0.807
Lus10040373.g
Linum usitatissimum
Lus10040373.g
I
0.807
Lus10036130.g
Linum usitatissimum
Lus10036130.g
I
0.807
VIT_06s0004g03350
Vitis vinifera
VIT_06s0004g03350
I
0.807
VIT_13s0019g03700
Vitis vinifera
VIT_13s0019g03700
I
0.807
Lus10011645.g
Linum usitatissimum
Lus10011645.g
I
0.807
Cla000556
Citrullus lanatus
Cla000556
I
0.807
GLYMA12G07650
Glycine max
GLYMA12G07650
I
0.807
GLYMA11G15810
Glycine max
GLYMA11G15810
N
0.807
cassava44959.m1
Manihot esculenta
cassava44959.m1
N
0.789
Gorai.012G094200
Gossypium raimondii
Gorai.012G094200
N
0.789
Cucsa.052720
Cucumis sativus
Cucsa.052720
I
0.789
MTR_4g060950
Medicago truncatula
MTR_4g060950
I
0.789
PGSC0003DMG400025384
Solanum tuberosum
PGSC0003DMG400025384
N
0.789
PRUPE_ppa023989mg
Prunus persica
PRUPE_ppa023989mg
I
0.789
Cucsa.166030
Cucumis sativus
Cucsa.166030
N
0.789
chr3.CM0246.260.nc
Lotus japonicus
chr3.CM0246.260.nc
N
0.789
VIT_06s0004g03330
Vitis vinifera
VIT_06s0004g03330
I
0.789
gene23226-v1.0-hybrid
Fragaria vesca
gene23226-v1.0-hybrid
N
0.772
Pm018585
Prunus mume
Pm018585
I
0.772
BRADI2G37960
Brachypodium distachyon
BRADI2G37960
N
0.754
Pavir.Ib01336
Panicum virgatum
Pavir.Ib01336
N
0.754
MDP0000879799
Malus domestica
MDP0000879799
N
0.754
MDP0000822986
Malus domestica
MDP0000822986
I
0.754
POPTR_0005s10050
Populus trichocarpa
POPTR_0005s10050
I
0.750
Carubv10010390m.g
Capsella rubella
Carubv10010390m.g
N
0.737
PDK_20s1595351g001
Phoenix dactylifera
PDK_20s1595351g001
N
0.737
VIT_13s0019g03820
Vitis vinifera
VIT_13s0019g03820
N
0.737
Ca_02507
Cicer arietinum
Ca_02507
N
0.737
OB03G23270
Oryza brachyantha
OB03G23270
N
0.737
Ciclev10032782m.g
Citrus clementina
Ciclev10032782m.g
N
0.737
GSMUA_Achr3G17800_001
Musa acuminata
GSMUA_Achr3G17800_001
N
0.719
Gorai.011G290800
Gossypium raimondii
Gorai.011G290800
I
0.719
Thhalv10008781m.g
Eutrema salsugineum
Thhalv10008781m.g
N
0.719
PK11564.1
Cannabis sativa
PK11564.1
I
0.719
orange1.1g044340m.g
Citrus sinensis
orange1.1g044340m.g
I
0.719
F775_02335
Aegilops tauschii
F775_02335
N
0.719
GLYMA08G17990
Glycine max
GLYMA08G17990
I
0.719
Lus10031769.g
Linum usitatissimum
Lus10031769.g
I
0.719
Ciclev10006113m.g
Citrus clementina
Ciclev10006113m.g
I
0.719
Cucsa.239660
Cucumis sativus
Cucsa.239660
I
0.719
VIT_13s0019g03840
Vitis vinifera
VIT_13s0019g03840
N
0.719
VIT_13s0019g03830
Vitis vinifera
VIT_13s0019g03830
N
0.719
POPTR_0007s08290
Populus trichocarpa
POPTR_0007s08290
I
0.719
LjSGA_079580.1.1
Lotus japonicus
LjSGA_079580.1.1
I
0.712
MDP0000268890
Malus domestica
MDP0000268890
I
0.702
orange1.1g036782m.g
Citrus sinensis
orange1.1g036782m.g
I
0.702
Si026864m.g
Setaria italica
Si026864m.g
I
0.702
MDP0000284409
Malus domestica
MDP0000284409
I
0.702
Bra018675
Brassica rapa
Bra018675
N
0.702
Solyc04g050010.1
Solanum lycopersicum
Solyc04g050010.1
N
0.702
MDP0000121203
Malus domestica
MDP0000121203
I
0.702
F775_08326
Aegilops tauschii
F775_08326
I
0.702
TCM_042447
Theobroma cacao
TCM_042447
I
0.702
Solyc11g045530.1
Solanum lycopersicum
Solyc11g045530.1
I
0.702
BRADI4G44850
Brachypodium distachyon
BRADI4G44850
I
0.702
PGSC0003DMG400008649
Solanum tuberosum
PGSC0003DMG400008649
I
0.702
Sb05g000550
Sorghum bicolor
Sb05g000550
I
0.702
PK09808.1
Cannabis sativa
PK09808.1
I
0.702
Thhalv10008917m.g
Eutrema salsugineum
Thhalv10008917m.g
I
0.702
PRUPE_ppa012253mg
Prunus persica
PRUPE_ppa012253mg
I
0.702
AMTR_s00032p00142260
Amborella trichopoda
AMTR_s00032p00142260
I
0.702
POPTR_0010s19180
Populus trichocarpa
POPTR_0010s19180
I
0.702
PRUPE_ppa012322mg
Prunus persica
PRUPE_ppa012322mg
I
0.702
SapurV1A.0673s0190
Salix purpurea
SapurV1A.0673s0190
I
0.702
ORGLA05G0108100
Oryza glaberrima
ORGLA05G0108100
I
0.702
Bo5g008590
Brassica oleracea
Bo5g008590
N
0.702
LBD4
Arabidopsis thaliana
AT1G31320
D
0.702
SapurV1A.0061s0670
Salix purpurea
SapurV1A.0061s0670
I
0.702
Si011647m.g
Setaria italica
Si011647m.g
I
0.702
LBD4
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_1002773
I
0.702
POPTR_0008s07280
Populus trichocarpa
POPTR_0008s07280
I
0.702
Cucsa.118370
Cucumis sativus
Cucsa.118370
I
0.702
mgf022958m
Mimulus guttatus
mgf022958m
I
0.702
mgf026046m
Mimulus guttatus
mgf026046m
I
0.702
Aquca_118_00035
Aquilegia coerulea
Aquca_118_00035
I
0.702
VIT_13s0067g01880
Vitis vinifera
VIT_13s0067g01880
I
0.702
Cla005133
Citrullus lanatus
Cla005133
N
0.702
cassava26200.m1
Manihot esculenta
cassava26200.m1
I
0.702
Pm011040
Prunus mume
Pm011040
I
0.702
cassava27818.m1
Manihot esculenta
cassava27818.m1
I
0.702
Pm010668
Prunus mume
Pm010668
I
0.702
Cla013678
Citrullus lanatus
Cla013678
I
0.702
Bostr.15697s0446
Boechera stricta
Bostr.15697s0446
I
0.702
Cagra.1508s0061
Capsella grandiflora
Cagra.1508s0061
I
0.702
LBD4
Vitis vinifera
VIT_00s0125g00290
I
0.702
gene20083-v1.0-hybrid
Fragaria vesca
gene20083-v1.0-hybrid
I
0.702
Gorai.002G104500
Gossypium raimondii
Gorai.002G104500
I
0.702
Traes_5BL_CE4CF3B5C
Triticum aestivum
Traes_5BL_CE4CF3B5C
I
0.702
30169.m006340
Ricinus communis
30169.m006340
I
0.702
evm.TU.supercontig_2.374
Carica papaya
evm.TU.supercontig_2.374
I
0.702
Ciclev10032929m.g
Citrus clementina
Ciclev10032929m.g
I
0.702
Carubv10010462m.g
Capsella rubella
Carubv10010462m.g
I
0.702
OBART05G12620
Oryza barthii
OBART05G12620
I
0.702
Ciclev10029962m.g
Citrus clementina
Ciclev10029962m.g
I
0.702
OGLUM05G01700
Oryza glumaepatula
OGLUM05G01700
N
0.702
Traes_4AS_669BAF6C7
Triticum aestivum
Traes_4AS_669BAF6C7
N
0.702