Bo2g097560 (Brassica oleracea)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bo2g097560 T244962_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.929 0.929
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.929 0.929
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.818 0.818
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.818 0.818
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo2g097560.1 LOB 15 114

Links

Other LOB family TFs
Other Brassica oleracea TFs

232 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra008514 Brassica rapa Bra008514 I 1.000
Bra037323 Brassica rapa Bra037323 I 0.939
Bo9g002160 Brassica oleracea Bo9g002160 I 0.939
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.929
LBD30 Arabidopsis thaliana AT4G00220 D 0.929
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.929
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.919
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.909
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.909
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.869
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.869
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.859
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.859
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.859
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.859
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.859
30174.m008898 Ricinus communis 30174.m008898 I 0.859
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.859
Pm017936 Prunus mume Pm017936 I 0.859
Cla007068 Citrullus lanatus Cla007068 I 0.859
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.848
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.848
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.848
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.838
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.828
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.828
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.828
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.828
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.828
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.828
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.828
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.828
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.828
OS03G0246900 Oryza sativa OS03G0246900 I 0.828
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.828
OBART03G10450 Oryza barthii OBART03G10450 I 0.828
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.828
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.828
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.828
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.828
Bra040311 Brassica rapa Bra040311 I 0.828
Bo4g024620 Brassica oleracea Bo4g024620 I 0.828
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.828
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.818
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.818
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.818
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.818
Bo4g195520 Brassica oleracea Bo4g195520 I 0.818
Bra004910 Brassica rapa Bra004910 I 0.818
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.818
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.818
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.818
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.818
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.818
LBD18 Arabidopsis thaliana AT2G45420 D 0.818
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.808
PK25573.1 Cannabis sativa PK25573.1 I 0.808
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.808
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.808
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.808
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.808
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.808
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.808
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.808
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.808
LBD20 Arabidopsis thaliana AT3G03760 I 0.798
Bo1g153580 Brassica oleracea Bo1g153580 I 0.798
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.798
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.798
OB10G12360 Oryza brachyantha OB10G12360 I 0.798
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.798
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.798
Bra036436 Brassica rapa Bra036436 I 0.798
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.798
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.798
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.798
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.788
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.788
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.788
mgf006429m Mimulus guttatus mgf006429m I 0.788
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.788
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.788
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.788
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.788
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.788
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.788
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.778
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.778
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.778
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.778
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.778
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.778
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.778
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.778
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.778
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.778
TCM_025849 Theobroma cacao TCM_025849 I 0.778
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.778
Ca_19598 Cicer arietinum Ca_19598 I 0.778
Pm017935 Prunus mume Pm017935 I 0.778
30174.m008897 Ricinus communis 30174.m008897 I 0.778
OS10G0162600 Oryza sativa OS10G0162600 I 0.778
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.768
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.768
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.768
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.768
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.768
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.768
Pm028642 Prunus mume Pm028642 I 0.768
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.768
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.768
Cla007069 Citrullus lanatus Cla007069 I 0.768
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.768
MDP0000322059 Malus domestica MDP0000322059 I 0.768
MDP0000429067 Malus domestica MDP0000429067 I 0.768
MDP0000254224 Malus domestica MDP0000254224 I 0.768
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.768
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.758
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.758
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.758
Cla002965 Citrullus lanatus Cla002965 I 0.758
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.758
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.758
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.758
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.758
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.758
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.758
TCM_005496 Theobroma cacao TCM_005496 I 0.758
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.758
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.758
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.758
30072.m000955 Ricinus communis 30072.m000955 I 0.758
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.747
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.747
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.747
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.747
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.747
Cucsa.257700 Cucumis sativus Cucsa.257700 I 0.747
PK23185.1 Cannabis sativa PK23185.1 I 0.747
TCM_005497 Theobroma cacao TCM_005497 I 0.747
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.747
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.747
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.747
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.745
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.737
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.737
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.737
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.737
OB08G30680 Oryza brachyantha OB08G30680 I 0.737
OB03G20590 Oryza brachyantha OB03G20590 I 0.737
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.737
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.737
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.737
Cla021625 Citrullus lanatus Cla021625 I 0.737
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.737
Ca_20428 Cicer arietinum Ca_20428 I 0.737
chr1.LjT38H23.30.nd Lotus japonicus chr1.LjT38H23.30.nd I 0.737
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.727
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.727
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.727
mgf020735m Mimulus guttatus mgf020735m I 0.727
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.727
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.727
GLYMA19G30200 Glycine max GLYMA19G30200 I 0.727
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.727
Si015156m.g Setaria italica Si015156m.g I 0.727
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.727
Bo3g036000 Brassica oleracea Bo3g036000 I 0.720
OBART08G23860 Oryza barthii OBART08G23860 I 0.717
OLONG_010223 Oryza longistaminata OLONG_010223 I 0.717
OBART03G03830 Oryza barthii OBART03G03830 I 0.717
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.717
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.717
OGLUM08G25340 Oryza glumaepatula OGLUM08G25340 I 0.717
OMERI08G18670 Oryza meridionalis OMERI08G18670 I 0.717
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.717
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.717
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.717
BGIOSGA026473 Oryza indica BGIOSGA026473 I 0.717
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.717
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.717
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.717
OB03G13890 Oryza brachyantha OB03G13890 I 0.717
Pavir.Fa00011 Panicum virgatum Pavir.Fa00011 I 0.717
MTR_1g070205 Medicago truncatula MTR_1g070205 I 0.717
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.717
MDP0000145761 Malus domestica MDP0000145761 I 0.717
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.717
Ca_12213 Cicer arietinum Ca_12213 I 0.717
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.717
ORUFI08G26340 Oryza rufipogon ORUFI08G26340 I 0.717
OS08G0563400 Oryza sativa OS08G0563400 I 0.717
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.717
Si040019m.g Setaria italica Si040019m.g I 0.717
TCM_004106 Theobroma cacao TCM_004106 I 0.717
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.717
OS03G0149100 Oryza sativa OS03G0149100 I 0.717
OPUNC08G21770 Oryza punctata OPUNC08G21770 I 0.717
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.717
ORGLA08G0192400 Oryza glaberrima ORGLA08G0192400 I 0.717
ONIVA09G01330 Oryza nivara ONIVA09G01330 I 0.717
Pm020629 Prunus mume Pm020629 I 0.707
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.707
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.707
LjT35F15.90.nd Lotus japonicus LjT35F15.90.nd I 0.707
mgf020773m Mimulus guttatus mgf020773m I 0.707
Cucsa.053450 Cucumis sativus Cucsa.053450 I 0.707
Ca_07763 Cicer arietinum Ca_07763 I 0.707
Cla006088 Citrullus lanatus Cla006088 I 0.707
Ca_12214 Cicer arietinum Ca_12214 I 0.707
BRADI3G12550 Brachypodium distachyon BRADI3G12550 I 0.707
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.707
Cla006087 Citrullus lanatus Cla006087 I 0.707
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.707
MTR_7g096610 Medicago truncatula MTR_7g096610 I 0.707
Gorai.007G144500 Gossypium raimondii Gorai.007G144500 I 0.707
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.707
Lus10000613.g Linum usitatissimum Lus10000613.g I 0.707
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.707
Gorai.004G073300 Gossypium raimondii Gorai.004G073300 I 0.707
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.707
29883.m002035 Ricinus communis 29883.m002035 I 0.707
Lus10033873.g Linum usitatissimum Lus10033873.g I 0.707
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.707
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.707
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.707
PRUPE_ppa025889mg Prunus persica PRUPE_ppa025889mg I 0.707
evm.TU.supercontig_50.42 Carica papaya evm.TU.supercontig_50.42 I 0.707
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.707
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.707
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.707
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.707