Bo2g144870 (Brassica oleracea)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bo2g144870 T244963_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.768 0.768
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo2g144870.1 LOB 12 110

Links

Other LOB family TFs
Other Brassica oleracea TFs

157 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra033019 Brassica rapa Bra033019 I 1.000
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.960
LBD25 Arabidopsis thaliana AT3G27650 I 0.949
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.949
Bra025294 Brassica rapa Bra025294 I 0.939
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.939
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.939
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.939
Bra039072 Brassica rapa Bra039072 I 0.919
Bo9g008330 Brassica oleracea Bo9g008330 I 0.919
Bo7g085860 Brassica oleracea Bo7g085860 I 0.909
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.848
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.848
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.838
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.838
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.838
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.828
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.828
TCM_016952 Theobroma cacao TCM_016952 I 0.828
Cla017388 Citrullus lanatus Cla017388 I 0.828
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.828
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.828
MDP0000848210 Malus domestica MDP0000848210 I 0.828
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.828
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.818
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.818
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.818
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.818
Pm015649 Prunus mume Pm015649 I 0.818
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.818
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.818
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.818
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.818
29917.m001993 Ricinus communis 29917.m001993 I 0.818
PK26472.1 Cannabis sativa PK26472.1 I 0.818
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.818
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.818
Cla010600 Citrullus lanatus Cla010600 I 0.818
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.818
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.808
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.808
Ca_24372 Cicer arietinum Ca_24372 I 0.808
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.798
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.798
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.788
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.788
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.788
PK29334.1 Cannabis sativa PK29334.1 I 0.781
mgf003146m Mimulus guttatus mgf003146m I 0.778
30147.m013890 Ricinus communis 30147.m013890 I 0.778
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.778
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.778
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.778
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.778
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.778
LOB Vitis vinifera VIT_17s0000g09010 I 0.768
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.768
Cla019510 Citrullus lanatus Cla019510 I 0.768
Pm024312 Prunus mume Pm024312 I 0.768
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.768
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.768
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.768
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.768
MDP0000130659 Malus domestica MDP0000130659 I 0.768
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.768
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.768
MDP0000254288 Malus domestica MDP0000254288 I 0.768
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.768
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.768
mgf024603m Mimulus guttatus mgf024603m I 0.768
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.768
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.768
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.768
Ca_07463 Cicer arietinum Ca_07463 I 0.768
TCM_012190 Theobroma cacao TCM_012190 I 0.768
LOB Arabidopsis lyrata scaffold_802995.1 I 0.768
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.768
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.768
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.768
Bra038606 Brassica rapa Bra038606 I 0.768
LOB Arabidopsis thaliana AT5G63090 D 0.768
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.768
Bo3g104760 Brassica oleracea Bo3g104760 I 0.768
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.768
F775_33210 Aegilops tauschii F775_33210 I 0.767
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.759
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.758
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.758
OS01G0169400 Oryza sativa OS01G0169400 I 0.758
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.758
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.758
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.758
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.758
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.758
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.758
Bo9g017470 Brassica oleracea Bo9g017470 I 0.758
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.758
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.758
OBART01G04470 Oryza barthii OBART01G04470 I 0.758
OB01G14220 Oryza brachyantha OB01G14220 I 0.758
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.758
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.758
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.758
Ca_08824 Cicer arietinum Ca_08824 I 0.758
Si002632m.g Setaria italica Si002632m.g I 0.758
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.758
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.758
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.758
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.758
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.747
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.747
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.747
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.747
F775_25656 Aegilops tauschii F775_25656 I 0.747
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.747
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.745
AMTR_s00083p00067130 Amborella trichopoda AMTR_s00083p00067130 I 0.742
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.738
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.737
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.737
Cla003499 Citrullus lanatus Cla003499 I 0.737
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.737
Bra035860 Brassica rapa Bra035860 I 0.737
PK18922.1 Cannabis sativa PK18922.1 I 0.737
PK21510.1 Cannabis sativa PK21510.1 I 0.737
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.737
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.737
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.737
mgf016361m Mimulus guttatus mgf016361m I 0.727
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.727
PK13228.1 Cannabis sativa PK13228.1 I 0.719
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.717
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.717
PK21617.1 Cannabis sativa PK21617.1 I 0.717
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.717
GSMUA_Achr7G23710_001 Musa acuminata GSMUA_Achr7G23710_001 I 0.717
Lus10028986.g Linum usitatissimum Lus10028986.g N 0.717
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.707
AS2 Vitis vinifera VIT_00s0340g00090 I 0.707
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.707
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.707
POPTR_0010s19340 Populus trichocarpa POPTR_0010s19340 N 0.707
POPTR_0008s07150 Populus trichocarpa POPTR_0008s07150 N 0.707
LBD21 Vitis vinifera VIT_13s0067g01450 N 0.707
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.707
cassava20837.m1 Manihot esculenta cassava20837.m1 N 0.707
29814.m000742 Ricinus communis 29814.m000742 N 0.707
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.707
Cla005851 Citrullus lanatus Cla005851 I 0.707
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.707
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.707
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.707
Eucgr.G03078 Eucalyptus grandis Eucgr.G03078 N 0.707
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.707
Ca_20200 Cicer arietinum Ca_20200 I 0.707
BGIOSGA002306 Oryza indica BGIOSGA002306 I 0.705
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.702