Bo3g065910 (Brassica oleracea)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bo3g065910 T244973_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD23
M06964_2.00 		Arabidopsis thaliana
NGCGNDRAWNNCGCN
NGCGNNWTYHNCGCN		 Dap-seq
OMalley et al.(2016)
LBD23_col_a 		0.889 0.889
LBD23
M06965_2.00 		Arabidopsis thaliana
DGCGDDRRWNNCGCN
NGCGNNWYYHHCGCH		 Dap-seq
OMalley et al.(2016)
LBD23_colamp_a 		0.889 0.889
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g065910.1 LOB 5 103

Links

Other LOB family TFs
Other Brassica oleracea TFs

14 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo7g083780 Brassica oleracea Bo7g083780 I 0.939
Bostr.0556s0333 Boechera stricta Bostr.0556s0333 I 0.929
Carubv10018979m.g Capsella rubella Carubv10018979m.g I 0.909
Cagra.3598s0013 Capsella grandiflora Cagra.3598s0013 I 0.909
scaffold_500562.1 Arabidopsis lyrata scaffold_500562.1 I 0.909
Thhalv10015971m.g Eutrema salsugineum Thhalv10015971m.g I 0.899
LBD23 Arabidopsis thaliana AT3G26620 D 0.889
LBD24 Arabidopsis thaliana AT3G26660 I 0.889
Thhalv10005497m.g Eutrema salsugineum Thhalv10005497m.g I 0.879
Bo00285s360 Brassica oleracea Bo00285s360 I 0.848
Bra032938 Brassica rapa Bra032938 I 0.804
Bra025217 Brassica rapa Bra025217 I 0.782
evm.TU.supercontig_50.154 Carica papaya evm.TU.supercontig_50.154 N 0.738
cassava11118.m1 Manihot esculenta cassava11118.m1 I 0.707