Bo4g012620 (Brassica oleracea)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bo4g012620 T244977_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD13
M06956_2.00
Arabidopsis thaliana
YGSCGDNDDHNVCGGHG

CDCCGBNDHHNHCGSCR
Dap-seq
OMalley et al.(2016)
LBD13_col_a
0.828 0.828
LBD13
M06957_2.00
Arabidopsis thaliana
CGSCGNNDDWNNCGG

CCGNNWHHNNCGSCG
Dap-seq
OMalley et al.(2016)
LBD13_colamp_a
0.828 0.828
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g012620.1 LOB 45 143

Links

Other LOB family TFs
Other Brassica oleracea TFs

185 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bra004572 Brassica rapa Bra004572 I 0.990
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.970
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.970
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.970
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.970
LBD15 Arabidopsis thaliana AT2G40470 I 0.970
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.960
Bra000188 Brassica rapa Bra000188 I 0.960
Bo4g190210 Brassica oleracea Bo4g190210 I 0.960
Bo3g034980 Brassica oleracea Bo3g034980 I 0.960
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.949
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.939
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.939
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.939
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.939
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.939
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.939
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.939
PK17217.1 Cannabis sativa PK17217.1 I 0.939
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.939
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.939
Bra016992 Brassica rapa Bra016992 I 0.939
TCM_045438 Theobroma cacao TCM_045438 I 0.939
29729.m002335 Ricinus communis 29729.m002335 I 0.929
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.929
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.929
Bo4g190140 Brassica oleracea Bo4g190140 I 0.921
MDP0000278334 Malus domestica MDP0000278334 I 0.919
Ca_04126 Cicer arietinum Ca_04126 I 0.919
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.919
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.919
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.919
Cla007391 Citrullus lanatus Cla007391 I 0.919
PK21617.1 Cannabis sativa PK21617.1 I 0.913
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.909
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.909
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.909
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.909
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.909
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.909
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.902
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.899
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.899
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.899
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.899
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.899
OB05G14280 Oryza brachyantha OB05G14280 I 0.897
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.889
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.889
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.889
29957.m001411 Ricinus communis 29957.m001411 I 0.889
MDP0000167580 Malus domestica MDP0000167580 I 0.880
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.879
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.879
OS05G0165450 Oryza sativa OS05G0165450 I 0.879
mgf011471m Mimulus guttatus mgf011471m I 0.879
Ca_12420 Cicer arietinum Ca_12420 I 0.879
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.879
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.879
TCM_042262 Theobroma cacao TCM_042262 I 0.879
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.879
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.879
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.879
OBART05G04570 Oryza barthii OBART05G04570 I 0.879
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.879
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.879
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.879
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.879
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.879
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.877
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.869
Si012018m.g Setaria italica Si012018m.g I 0.869
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.869
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.869
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.869
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.859
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.859
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.859
mgf020556m Mimulus guttatus mgf020556m I 0.859
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.859
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.859
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.859
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.859
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.859
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.859
F775_52636 Aegilops tauschii F775_52636 I 0.859
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.859
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.859
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.859
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.859
Si004575m.g Setaria italica Si004575m.g I 0.859
Ca_15642 Cicer arietinum Ca_15642 I 0.859
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.848
OBART01G35680 Oryza barthii OBART01G35680 I 0.848
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.848
OB01G44400 Oryza brachyantha OB01G44400 I 0.848
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.848
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.848
F775_25790 Aegilops tauschii F775_25790 I 0.848
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.848
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.848
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.848
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.848
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.848
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.848
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.848
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.848
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.848
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.848
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.848
OS01G0825000 Oryza sativa OS01G0825000 I 0.848
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.848
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.848
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.848
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.848
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.838
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.838
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.838
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.838
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.838
Bo4g172950 Brassica oleracea Bo4g172950 I 0.838
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.838
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.838
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.838
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.838
Bra021627 Brassica rapa Bra021627 I 0.838
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.830
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.828
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.828
Pm000277 Prunus mume Pm000277 I 0.828
Bra018320 Brassica rapa Bra018320 I 0.828
Bo4g059520 Brassica oleracea Bo4g059520 I 0.828
LBD13 Arabidopsis thaliana AT2G30340 D 0.828
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.828
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.828
PK03716.1 Cannabis sativa PK03716.1 I 0.824
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.818
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.818
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.818
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.818
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.798
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.798
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.797
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N 0.763
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.758
PK17019.1 Cannabis sativa PK17019.1 I 0.735
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.727
Cla006731 Citrullus lanatus Cla006731 I 0.727
mgf026046m Mimulus guttatus mgf026046m I 0.727
PK29334.1 Cannabis sativa PK29334.1 I 0.719
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.717
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.717
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.717
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.717
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.717
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.717
Pm011040 Prunus mume Pm011040 I 0.717
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.717
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.717
Si026864m.g Setaria italica Si026864m.g I 0.717
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.717
Si037583m.g Setaria italica Si037583m.g I 0.717
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.717
MDP0000268890 Malus domestica MDP0000268890 I 0.717
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.717
PK11564.1 Cannabis sativa PK11564.1 I 0.717
MDP0000284409 Malus domestica MDP0000284409 I 0.717
F775_33210 Aegilops tauschii F775_33210 I 0.712
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.707
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.707
TCM_032557 Theobroma cacao TCM_032557 I 0.707
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.707
30169.m006340 Ricinus communis 30169.m006340 I 0.707
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.707
Cla013678 Citrullus lanatus Cla013678 I 0.707
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.707
Bo3g024350 Brassica oleracea Bo3g024350 I 0.707
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.707
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.707
Bra022780 Brassica rapa Bra022780 I 0.707
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.707
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.707
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.707
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.707
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.707