Bo4g024610 (Brassica oleracea)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bo4g024610 T244979_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD19
M06960_2.00
Arabidopsis thaliana
CCKKAAAWHMMGSND

HNSCKKDWTTTMMGG
Dap-seq
OMalley et al.(2016)
LBD19_col_a
0.909 0.909
LBD19
M06961_2.00
Arabidopsis thaliana
WWYCCGG

CCGGRWW
Dap-seq
OMalley et al.(2016)
LBD19_colamp_a
0.909 0.909
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.707 0.707
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g024610.1 LOB 15 114

Links

Other LOB family TFs
Other Brassica oleracea TFs

125 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bra004908 Brassica rapa Bra004908 I 0.970
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.919
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.919
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.919
LBD19 Arabidopsis thaliana AT2G45410 D 0.909
Bra040312 Brassica rapa Bra040312 I 0.899
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.899
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.889
Bo4g195510 Brassica oleracea Bo4g195510 I 0.854
PK25573.1 Cannabis sativa PK25573.1 I 0.808
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.798
Pm017935 Prunus mume Pm017935 I 0.788
MDP0000429067 Malus domestica MDP0000429067 I 0.788
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.788
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.788
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.788
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.788
mgf020735m Mimulus guttatus mgf020735m I 0.778
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.778
scaffold_403397.1 Arabidopsis lyrata scaffold_403397.1 I 0.778
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.778
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.778
30174.m008897 Ricinus communis 30174.m008897 I 0.778
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.778
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.778
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.778
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.778
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.778
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.768
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.768
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.768
TCM_005497 Theobroma cacao TCM_005497 I 0.768
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.768
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.768
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.758
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.758
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.758
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.758
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.756
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.747
Cla007069 Citrullus lanatus Cla007069 I 0.747
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.747
Ca_19598 Cicer arietinum Ca_19598 I 0.747
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.747
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.747
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.747
OBART03G10450 Oryza barthii OBART03G10450 I 0.747
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.747
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.747
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.747
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.747
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.747
LBD31 Arabidopsis thaliana AT4G00210 I 0.747
Bo9g002150 Brassica oleracea Bo9g002150 I 0.747
Bra037322 Brassica rapa Bra037322 I 0.747
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.747
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.747
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.747
OS03G0246900 Oryza sativa OS03G0246900 I 0.747
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.747
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.747
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.747
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.744
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.737
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.737
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.737
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.737
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.737
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.737
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.737
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.737
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.737
30174.m008898 Ricinus communis 30174.m008898 I 0.737
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.737
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.736
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.733
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.727
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.727
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.727
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.727
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.727
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.727
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.727
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.727
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.727
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.727
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.727
Cla007068 Citrullus lanatus Cla007068 I 0.727
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.727
Pm017936 Prunus mume Pm017936 I 0.727
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.727
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.727
PGSC0003DMG400012757 Solanum tuberosum PGSC0003DMG400012757 I 0.726
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.724
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.723
Bra001087 Brassica rapa Bra001087 I 0.721
Ca_20429 Cicer arietinum Ca_20429 I 0.719
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.717
MDP0000254224 Malus domestica MDP0000254224 I 0.717
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.717
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.717
Ca_20428 Cicer arietinum Ca_20428 I 0.717
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.717
TCM_025849 Theobroma cacao TCM_025849 I 0.717
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.717
Bra040311 Brassica rapa Bra040311 I 0.717
Bo4g195520 Brassica oleracea Bo4g195520 I 0.717
Cla002965 Citrullus lanatus Cla002965 I 0.717
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.717
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.717
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.714
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.707
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.707
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.707
Bo4g024620 Brassica oleracea Bo4g024620 I 0.707
LBD18 Arabidopsis thaliana AT2G45420 D 0.707
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.707
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.707
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.707
TCM_005496 Theobroma cacao TCM_005496 I 0.707
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.707
OB10G12360 Oryza brachyantha OB10G12360 I 0.707
MDP0000322059 Malus domestica MDP0000322059 I 0.707
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.707
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.702