Bo4g190210 (Brassica oleracea)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bo4g190210 T244990_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD13
M06956_2.00
Arabidopsis thaliana
YGSCGDNDDHNVCGGHG

CDCCGBNDHHNHCGSCR
Dap-seq
OMalley et al.(2016)
LBD13_col_a
0.859 0.859
LBD13
M06957_2.00
Arabidopsis thaliana
CGSCGNNDDWNNCGG

CCGNNWHHNNCGSCG
Dap-seq
OMalley et al.(2016)
LBD13_colamp_a
0.859 0.859
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g190210.1 LOB 46 144

Links

Other LOB family TFs
Other Brassica oleracea TFs

200 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.980
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.980
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.980
LBD15 Arabidopsis thaliana AT2G40470 I 0.980
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.980
Bra000188 Brassica rapa Bra000188 I 0.970
Bra016992 Brassica rapa Bra016992 I 0.970
Bo3g034980 Brassica oleracea Bo3g034980 I 0.970
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.970
PK17217.1 Cannabis sativa PK17217.1 I 0.960
Bra004572 Brassica rapa Bra004572 I 0.960
Cla007391 Citrullus lanatus Cla007391 I 0.960
Bo4g012620 Brassica oleracea Bo4g012620 I 0.960
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.949
Bo4g190140 Brassica oleracea Bo4g190140 I 0.947
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.939
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.939
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.939
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.939
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.939
TCM_045438 Theobroma cacao TCM_045438 I 0.939
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.939
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.939
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.939
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.939
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.939
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.939
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.939
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.929
Ca_04126 Cicer arietinum Ca_04126 I 0.929
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.929
29729.m002335 Ricinus communis 29729.m002335 I 0.929
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.919
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.919
MDP0000278334 Malus domestica MDP0000278334 I 0.919
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.919
PK21617.1 Cannabis sativa PK21617.1 I 0.913
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.909
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.909
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.909
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.909
MDP0000167580 Malus domestica MDP0000167580 I 0.900
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.899
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.899
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.899
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.899
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.899
OB05G14280 Oryza brachyantha OB05G14280 I 0.897
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.890
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.889
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.889
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.889
mgf020556m Mimulus guttatus mgf020556m I 0.889
mgf011471m Mimulus guttatus mgf011471m I 0.889
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.889
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.889
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.889
Ca_12420 Cicer arietinum Ca_12420 I 0.889
29957.m001411 Ricinus communis 29957.m001411 I 0.889
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.879
OS05G0165450 Oryza sativa OS05G0165450 I 0.879
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.879
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.879
TCM_042262 Theobroma cacao TCM_042262 I 0.879
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.879
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.879
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.879
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.879
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.879
OBART05G04570 Oryza barthii OBART05G04570 I 0.879
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.879
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.879
Pm019028 Prunus mume Pm019028 I 0.873
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.869
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.869
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.869
Bo4g172950 Brassica oleracea Bo4g172950 I 0.869
Si012018m.g Setaria italica Si012018m.g I 0.869
Bra021627 Brassica rapa Bra021627 I 0.869
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.863
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.859
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.859
OBART01G35680 Oryza barthii OBART01G35680 I 0.859
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.859
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.859
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.859
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.859
Bo4g059520 Brassica oleracea Bo4g059520 I 0.859
OB01G44400 Oryza brachyantha OB01G44400 I 0.859
F775_25790 Aegilops tauschii F775_25790 I 0.859
Bra018320 Brassica rapa Bra018320 I 0.859
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.859
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.859
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.859
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.859
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.859
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.859
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.859
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.859
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.859
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.859
F775_52636 Aegilops tauschii F775_52636 I 0.859
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.859
LBD13 Arabidopsis thaliana AT2G30340 D 0.859
Si004575m.g Setaria italica Si004575m.g I 0.859
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.859
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.859
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.859
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.859
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.859
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.859
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.859
OS01G0825000 Oryza sativa OS01G0825000 I 0.859
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.859
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.859
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.859
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.859
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.848
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.848
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.848
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.848
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.848
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.848
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.848
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.848
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.848
Ca_15642 Cicer arietinum Ca_15642 I 0.848
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.848
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.848
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.838
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.838
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.838
Pm000277 Prunus mume Pm000277 I 0.838
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.838
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.838
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.838
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.830
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.818
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.818
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.818
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.818
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.818
PK03716.1 Cannabis sativa PK03716.1 I 0.794
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.780
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.758
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N 0.746
Cla006731 Citrullus lanatus Cla006731 I 0.745
PK17019.1 Cannabis sativa PK17019.1 I 0.735
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.734
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.727
mgf026046m Mimulus guttatus mgf026046m I 0.727
PK29334.1 Cannabis sativa PK29334.1 I 0.719
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.717
Bra021612 Brassica rapa Bra021612 I 0.717
Si037583m.g Setaria italica Si037583m.g I 0.717
Bo3g024350 Brassica oleracea Bo3g024350 I 0.717
PK11564.1 Cannabis sativa PK11564.1 I 0.717
Bo4g170770 Brassica oleracea Bo4g170770 I 0.717
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.717
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.717
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.717
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.717
Bra022780 Brassica rapa Bra022780 I 0.717
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.717
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.717
F775_33210 Aegilops tauschii F775_33210 I 0.712
LBD12 Arabidopsis thaliana AT2G30130 I 0.707
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.707
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.707
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.707
Cla013678 Citrullus lanatus Cla013678 I 0.707
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.707
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.707
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.707
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.707
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.707
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.707
PGSC0003DMG400023939 Solanum tuberosum PGSC0003DMG400023939 I 0.707
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.707
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.707
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.707
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.707
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.707
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.707
Si026864m.g Setaria italica Si026864m.g I 0.707
Solyc06g050950.2 Solanum lycopersicum Solyc06g050950.2 I 0.707
Bra018335 Brassica rapa Bra018335 I 0.707
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.707
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.707
Bo4g059700 Brassica oleracea Bo4g059700 I 0.707
MDP0000268890 Malus domestica MDP0000268890 I 0.707
MDP0000155138 Malus domestica MDP0000155138 I 0.707
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.707
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.707
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I 0.707
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.707
Pm011040 Prunus mume Pm011040 I 0.707
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.707
Carubv10025543m.g Capsella rubella Carubv10025543m.g I 0.707
MDP0000284409 Malus domestica MDP0000284409 I 0.707