Bo4g195510 (Brassica oleracea)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bo4g195510 T244993_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.876 0.876
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.876 0.876
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.719 0.719
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.719 0.719
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g195510.1 LOB 28 117

Links

Other LOB family TFs
Other Brassica oleracea TFs

159 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra040312 Brassica rapa Bra040312 I 0.966
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.876
LBD19 Arabidopsis thaliana AT2G45410 D 0.876
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.865
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.865
Bo4g024610 Brassica oleracea Bo4g024610 I 0.854
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.843
MDP0000429067 Malus domestica MDP0000429067 I 0.809
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.809
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.798
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.798
30174.m008897 Ricinus communis 30174.m008897 I 0.798
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.798
Pm017935 Prunus mume Pm017935 I 0.798
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.798
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.798
PK25573.1 Cannabis sativa PK25573.1 I 0.787
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.787
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.787
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.787
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.787
TCM_005497 Theobroma cacao TCM_005497 I 0.787
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.775
Bra037322 Brassica rapa Bra037322 I 0.775
Bo9g002150 Brassica oleracea Bo9g002150 I 0.775
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.764
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.764
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.764
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.764
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.764
Ca_19598 Cicer arietinum Ca_19598 I 0.764
Bra004908 Brassica rapa Bra004908 I 0.758
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.758
Cla007068 Citrullus lanatus Cla007068 I 0.753
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.753
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.753
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.753
Ca_20429 Cicer arietinum Ca_20429 I 0.753
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.753
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.753
MDP0000254224 Malus domestica MDP0000254224 I 0.753
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.753
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.753
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.753
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.753
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.753
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.753
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.753
30174.m008898 Ricinus communis 30174.m008898 I 0.753
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.753
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.753
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.753
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.753
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.753
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.745
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.742
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.742
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.742
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.742
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.742
TCM_005496 Theobroma cacao TCM_005496 I 0.742
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.742
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.742
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.742
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.742
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.742
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.742
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.742
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.742
OBART03G10450 Oryza barthii OBART03G10450 I 0.742
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.742
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.742
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.742
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.742
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.742
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.742
OB10G12360 Oryza brachyantha OB10G12360 I 0.742
OS03G0246900 Oryza sativa OS03G0246900 I 0.742
LBD31 Arabidopsis thaliana AT4G00210 I 0.730
Lus10024877.g Linum usitatissimum Lus10024877.g I 0.730
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.730
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.730
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.730
OB03G20590 Oryza brachyantha OB03G20590 I 0.730
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.730
GLYMA13G18191 Glycine max GLYMA13G18191 I 0.730
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.730
Lus10000707.g Linum usitatissimum Lus10000707.g I 0.730
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.730
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.730
OS10G0162600 Oryza sativa OS10G0162600 I 0.730
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.730
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.730
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.730
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.730
mgf020735m Mimulus guttatus mgf020735m I 0.727
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.725
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.719
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.719
chr5.CM0494.160.nd Lotus japonicus chr5.CM0494.160.nd I 0.719
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.719
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.719
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.719
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.719
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.719
Bra040311 Brassica rapa Bra040311 I 0.719
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.719
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.719
Bra004910 Brassica rapa Bra004910 I 0.719
Bo4g195520 Brassica oleracea Bo4g195520 I 0.719
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.719
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.719
MDP0000145761 Malus domestica MDP0000145761 I 0.719
Bo4g024620 Brassica oleracea Bo4g024620 I 0.719
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.719
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.719
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.717
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.717
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.717
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.713
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.713
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.708
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.708
Bo4g191530 Brassica oleracea Bo4g191530 I 0.708
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.708
Bra000257 Brassica rapa Bra000257 I 0.708
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.708
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.708
Lus10033872.g Linum usitatissimum Lus10033872.g I 0.708
Bra004693 Brassica rapa Bra004693 I 0.708
Bo4g016000 Brassica oleracea Bo4g016000 I 0.708
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.708
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.708
OB08G30680 Oryza brachyantha OB08G30680 I 0.708
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.708
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.708
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.708
Bo3g036030 Brassica oleracea Bo3g036030 I 0.708
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.708
Ca_12213 Cicer arietinum Ca_12213 I 0.708
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.708
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.708
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.708
BRADI3G12550 Brachypodium distachyon BRADI3G12550 I 0.708
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.708
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.708
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.708
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.708
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.708
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.708
GSMUA_Achr5G13230_001 Musa acuminata GSMUA_Achr5G13230_001 I 0.708
Bra016877 Brassica rapa Bra016877 I 0.708
Ca_20428 Cicer arietinum Ca_20428 I 0.708
Cla021625 Citrullus lanatus Cla021625 I 0.708
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.708
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.708
29883.m002035 Ricinus communis 29883.m002035 I 0.708
Pm020629 Prunus mume Pm020629 I 0.708
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.708