Bo5g021980 (Brassica oleracea)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bo5g021980 T244997_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.737 0.737
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g021980.1 LOB 13 111

Links

Other LOB family TFs
Other Brassica oleracea TFs

209 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra026042 Brassica rapa Bra026042 I 0.980
Thhalv10009386m.g Eutrema salsugineum Thhalv10009386m.g I 0.929
LBD3 Arabidopsis lyrata Al_scaffold_0001_1711 I 0.919
Bra026716 Brassica rapa Bra026716 I 0.909
Bo8g105450 Brassica oleracea Bo8g105450 I 0.909
Cagra.0824s0026 Capsella grandiflora Cagra.0824s0026 I 0.889
Bostr.7128s0261 Boechera stricta Bostr.7128s0261 I 0.889
LBD3 Arabidopsis thaliana AT1G16530 I 0.889
Pm011040 Prunus mume Pm011040 I 0.788
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.788
MDP0000284409 Malus domestica MDP0000284409 I 0.788
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.788
MDP0000268890 Malus domestica MDP0000268890 I 0.788
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.788
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.788
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.788
PK11564.1 Cannabis sativa PK11564.1 I 0.788
30169.m006340 Ricinus communis 30169.m006340 I 0.788
Cla013678 Citrullus lanatus Cla013678 I 0.788
TCM_032557 Theobroma cacao TCM_032557 I 0.788
Ca_13575 Cicer arietinum Ca_13575 I 0.778
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.778
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.778
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.778
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.778
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.778
MDP0000121203 Malus domestica MDP0000121203 I 0.778
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I 0.778
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.778
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.778
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.778
Ca_06548 Cicer arietinum Ca_06548 I 0.778
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.778
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.778
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.778
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.778
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.778
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.778
Gorai.011G051200 Gossypium raimondii Gorai.011G051200 I 0.778
POPTR_0003s14880 Populus trichocarpa POPTR_0003s14880 I 0.768
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.768
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I 0.768
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I 0.768
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.768
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I 0.768
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.768
TCM_029315 Theobroma cacao TCM_029315 I 0.768
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.768
POPTR_0001s11610 Populus trichocarpa POPTR_0001s11610 I 0.768
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.768
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.768
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I 0.768
SapurV1A.0094s0480 Salix purpurea SapurV1A.0094s0480 I 0.768
GLYMA09G02510 Glycine max GLYMA09G02510 I 0.768
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.768
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.768
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.768
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.768
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.768
PK21617.1 Cannabis sativa PK21617.1 I 0.761
Lus10040638.g Linum usitatissimum Lus10040638.g I 0.758
Cla009336 Citrullus lanatus Cla009336 I 0.758
Cucsa.236600 Cucumis sativus Cucsa.236600 I 0.758
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.758
PK24688.1 Cannabis sativa PK24688.1 I 0.758
Solyc02g069440.2 Solanum lycopersicum Solyc02g069440.2 I 0.758
mgf026046m Mimulus guttatus mgf026046m I 0.758
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.747
chr3.CM0176.110.nc Lotus japonicus chr3.CM0176.110.nc I 0.747
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.747
Ciclev10006208m.g Citrus clementina Ciclev10006208m.g I 0.747
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.747
Eucgr.E02016 Eucalyptus grandis Eucgr.E02016 I 0.747
GLYMA15G41020 Glycine max GLYMA15G41020 I 0.747
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.747
orange1.1g041989m.g Citrus sinensis orange1.1g041989m.g I 0.747
Bra014907 Brassica rapa Bra014907 I 0.737
Bra021612 Brassica rapa Bra021612 I 0.737
LBD4 Arabidopsis thaliana AT1G31320 D 0.737
Bo7g041000 Brassica oleracea Bo7g041000 I 0.737
Bo4g170770 Brassica oleracea Bo4g170770 I 0.737
evm.TU.supercontig_19.133 Carica papaya evm.TU.supercontig_19.133 I 0.737
LPERR03G23450 Leersia perrieri LPERR03G23450 I 0.737
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.737
mgf022958m Mimulus guttatus mgf022958m I 0.737
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.737
Si037583m.g Setaria italica Si037583m.g I 0.737
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.737
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.737
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.737
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.737
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.737
cassava26200.m1 Manihot esculenta cassava26200.m1 I 0.737
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.737
LjSGA_079580.1.1 Lotus japonicus LjSGA_079580.1.1 I 0.731
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.731
cassava20865.m1 Manihot esculenta cassava20865.m1 I 0.727
29729.m002278 Ricinus communis 29729.m002278 I 0.727
gene28202-v1.0-hybrid Fragaria vesca gene28202-v1.0-hybrid I 0.727
Pm018982 Prunus mume Pm018982 I 0.727
gene21039-v1.0-hybrid Fragaria vesca gene21039-v1.0-hybrid I 0.727
Gorai.010G195100 Gossypium raimondii Gorai.010G195100 I 0.727
MDP0000265429 Malus domestica MDP0000265429 I 0.727
SapurV1A.0673s0190 Salix purpurea SapurV1A.0673s0190 I 0.727
MDP0000861160 Malus domestica MDP0000861160 I 0.727
Eucgr.B03991 Eucalyptus grandis Eucgr.B03991 I 0.727
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.727
gw1.66.118.1 Physcomitrella patens gw1.66.118.1 I 0.727
gw1.238.28.1 Physcomitrella patens gw1.238.28.1 D 0.727
Aquca_030_00227 Aquilegia coerulea Aquca_030_00227 I 0.727
Bostr.29246s0022 Boechera stricta Bostr.29246s0022 I 0.727
Carubv10025543m.g Capsella rubella Carubv10025543m.g I 0.727
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.727
Ca_12450 Cicer arietinum Ca_12450 I 0.727
POPTR_0001s28840 Populus trichocarpa POPTR_0001s28840 I 0.727
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.727
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.727
SELMODRAFT_49084 Selaginella moellendorffii SELMODRAFT_49084 I 0.727
MTR_3g071590 Medicago truncatula MTR_3g071590 I 0.727
TCM_042447 Theobroma cacao TCM_042447 I 0.727
POPTR_0008s07280 Populus trichocarpa POPTR_0008s07280 I 0.727
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.727
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.727
GLYMA14G06140 Glycine max GLYMA14G06140 I 0.727
GLYMA02G43030 Glycine max GLYMA02G43030 I 0.727
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.727
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.727
LBD12 Arabidopsis thaliana AT2G30130 I 0.727
Ca_08998 Cicer arietinum Ca_08998 I 0.727
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.727
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I 0.727
Bra018335 Brassica rapa Bra018335 I 0.727
Bo4g059700 Brassica oleracea Bo4g059700 I 0.727
OMERI05G11330 Oryza meridionalis OMERI05G11330 I 0.717
ONIVA05G13090 Oryza nivara ONIVA05G13090 I 0.717
ORGLA05G0108100 Oryza glaberrima ORGLA05G0108100 I 0.717
OPUNC05G10670 Oryza punctata OPUNC05G10670 I 0.717
OPUNC03G25820 Oryza punctata OPUNC03G25820 I 0.717
Pm000193 Prunus mume Pm000193 I 0.717
Gorai.003G149600 Gossypium raimondii Gorai.003G149600 I 0.717
OB05G20740 Oryza brachyantha OB05G20740 I 0.717
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.717
GSMUA_Achr2G13170_001 Musa acuminata GSMUA_Achr2G13170_001 I 0.717
BGIOSGA018245 Oryza indica BGIOSGA018245 I 0.717
BGIOSGA018244 Oryza indica BGIOSGA018244 I 0.717
LPERR05G10020 Leersia perrieri LPERR05G10020 I 0.717
MLOC_54949 Hordeum vulgare MLOC_54949 I 0.717
OBART05G12620 Oryza barthii OBART05G12620 I 0.717
Lus10031285.g Linum usitatissimum Lus10031285.g I 0.717
Lus10031855.g Linum usitatissimum Lus10031855.g I 0.717
Lus10007525.g Linum usitatissimum Lus10007525.g I 0.717
OGLUM05G13250 Oryza glumaepatula OGLUM05G13250 I 0.717
ASL5 Vitis vinifera VIT_06s0004g07200 I 0.717
Traes_1AL_DB7593004 Triticum aestivum Traes_1AL_DB7593004 I 0.717
Solyc12g100150.1 Solanum lycopersicum Solyc12g100150.1 I 0.717
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.717
VIT_13s0067g01880 Vitis vinifera VIT_13s0067g01880 I 0.717
TRIUR3_11841 Triticum urartu TRIUR3_11841 I 0.717
Cucsa.144430 Cucumis sativus Cucsa.144430 I 0.717
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I 0.717
mgf018189m Mimulus guttatus mgf018189m I 0.717
Traes_4BS_E9E0C550B Triticum aestivum Traes_4BS_E9E0C550B I 0.717
Traes_4DS_DA077BB06 Triticum aestivum Traes_4DS_DA077BB06 I 0.717
Si024229m.g Setaria italica Si024229m.g I 0.717
Sb09g016240 Sorghum bicolor Sb09g016240 I 0.717
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.717
Eucgr.J00175 Eucalyptus grandis Eucgr.J00175 I 0.717
OS05G0346800 Oryza sativa OS05G0346800 I 0.717
ORUFI05G13610 Oryza rufipogon ORUFI05G13610 I 0.717
PGSC0003DMG402023851 Solanum tuberosum PGSC0003DMG402023851 I 0.717
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.717
Cla005598 Citrullus lanatus Cla005598 I 0.717
PRUPE_ppa012275mg Prunus persica PRUPE_ppa012275mg I 0.717
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.717
Cla007354 Citrullus lanatus Cla007354 I 0.717
Traes_1BL_04EFBAECF Triticum aestivum Traes_1BL_04EFBAECF I 0.717
orange1.1g038565m.g Citrus sinensis orange1.1g038565m.g I 0.710
Bra022780 Brassica rapa Bra022780 I 0.707
mgf019461m Mimulus guttatus mgf019461m I 0.707
MDP0000155138 Malus domestica MDP0000155138 I 0.707
MDP0000194766 Malus domestica MDP0000194766 I 0.707
GRMZM2G044150 Zea mays GRMZM2G044150 I 0.707
GLYMA18G02780 Glycine max GLYMA18G02780 I 0.707
TCM_042212 Theobroma cacao TCM_042212 I 0.707
Bo3g024350 Brassica oleracea Bo3g024350 I 0.707
POPTR_0009s08060 Populus trichocarpa POPTR_0009s08060 I 0.707
PDK_20s1728161g001 Phoenix dactylifera PDK_20s1728161g001 I 0.707
chr6.CM0738.260.nd Lotus japonicus chr6.CM0738.260.nd I 0.707
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.707
Si026864m.g Setaria italica Si026864m.g I 0.707
Ca_13388 Cicer arietinum Ca_13388 I 0.707
GSMUA_Achr7G00880_001 Musa acuminata GSMUA_Achr7G00880_001 I 0.707
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.707
Traes_4AL_AD9C8CB77 Triticum aestivum Traes_4AL_AD9C8CB77 I 0.707
Pavir.Ca01985 Panicum virgatum Pavir.Ca01985 I 0.707
GSMUA_Achr5G29470_001 Musa acuminata GSMUA_Achr5G29470_001 I 0.707
GSMUA_Achr9G18030_001 Musa acuminata GSMUA_Achr9G18030_001 I 0.707
GSMUA_Achr6G15660_001 Musa acuminata GSMUA_Achr6G15660_001 I 0.707
GSMUA_Achr8G02800_001 Musa acuminata GSMUA_Achr8G02800_001 I 0.707
GSMUA_Achr10G14880_001 Musa acuminata GSMUA_Achr10G14880_001 I 0.707
GSMUA_Achr10G13050_001 Musa acuminata GSMUA_Achr10G13050_001 I 0.707
Pavir.J21476 Panicum virgatum Pavir.J21476 I 0.707
Pavir.J22399 Panicum virgatum Pavir.J22399 I 0.707
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.707
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.707
SapurV1A.0042s0120 Salix purpurea SapurV1A.0042s0120 I 0.707
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.707
PK17019.1 Cannabis sativa PK17019.1 I 0.706
MDP0000167580 Malus domestica MDP0000167580 I 0.700