Bo9g002150 (Brassica oleracea)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bo9g002150 T245019_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.737 0.737
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.737 0.737
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.707 0.707
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo9g002150.1 LOB 11 110

Links

Other LOB family TFs
Other Brassica oleracea TFs

216 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra037322 Brassica rapa Bra037322 I 1.000
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.869
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.869
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.869
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.859
LBD31 Arabidopsis thaliana AT4G00210 I 0.828
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.798
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.789
MDP0000429067 Malus domestica MDP0000429067 I 0.778
PK25573.1 Cannabis sativa PK25573.1 I 0.778
Bo4g195510 Brassica oleracea Bo4g195510 I 0.775
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.770
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.768
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.768
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.768
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.768
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.768
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.758
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.758
30174.m008897 Ricinus communis 30174.m008897 I 0.758
OBART03G10450 Oryza barthii OBART03G10450 I 0.758
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.758
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.758
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.758
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.758
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.758
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.758
TCM_005497 Theobroma cacao TCM_005497 I 0.758
Ca_19598 Cicer arietinum Ca_19598 I 0.758
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.758
OS03G0246900 Oryza sativa OS03G0246900 I 0.758
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.758
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.758
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.758
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.758
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.758
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.758
LBD31 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002970 N 0.758
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.758
Bra040312 Brassica rapa Bra040312 I 0.758
Bra004908 Brassica rapa Bra004908 I 0.758
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.758
Ca_20429 Cicer arietinum Ca_20429 I 0.753
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.747
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.747
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.747
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.747
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.747
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.747
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.747
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.747
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.747
Pm017936 Prunus mume Pm017936 I 0.747
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.747
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.747
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.747
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.747
Cla007068 Citrullus lanatus Cla007068 I 0.747
Pm017935 Prunus mume Pm017935 I 0.747
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.747
OS10G0162600 Oryza sativa OS10G0162600 I 0.747
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.747
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.747
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.747
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.747
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.747
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.747
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.747
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.747
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.747
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.747
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.747
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.747
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.747
mgf006429m Mimulus guttatus mgf006429m I 0.747
mgf020735m Mimulus guttatus mgf020735m I 0.747
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.747
OB10G12360 Oryza brachyantha OB10G12360 I 0.747
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.747
Bo4g024610 Brassica oleracea Bo4g024610 I 0.747
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.745
PGSC0003DMG400012757 Solanum tuberosum PGSC0003DMG400012757 I 0.740
TCM_005496 Theobroma cacao TCM_005496 I 0.739
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.737
LBD19 Arabidopsis thaliana AT2G45410 D 0.737
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.737
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.737
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.737
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.737
30174.m008898 Ricinus communis 30174.m008898 I 0.737
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.737
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.737
30072.m000955 Ricinus communis 30072.m000955 I 0.737
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.737
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.737
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.737
Ca_20428 Cicer arietinum Ca_20428 I 0.737
Pm028642 Prunus mume Pm028642 I 0.737
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.737
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.737
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.737
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.737
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.737
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.737
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.737
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.737
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.734
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.727
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.727
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.727
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.727
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.727
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.727
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.727
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.727
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.727
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.727
GLYMA19G30200 Glycine max GLYMA19G30200 I 0.727
chr1.LjT38H23.30.nd Lotus japonicus chr1.LjT38H23.30.nd I 0.727
LBD20 Arabidopsis thaliana AT3G03760 I 0.727
MDP0000322059 Malus domestica MDP0000322059 I 0.727
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.727
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.727
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.727
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.727
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.727
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.727
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.727
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.727
Ca_12213 Cicer arietinum Ca_12213 I 0.727
Cla002965 Citrullus lanatus Cla002965 I 0.727
TCM_004106 Theobroma cacao TCM_004106 I 0.727
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.724
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.724
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.723
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.719
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.717
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.717
TCM_025849 Theobroma cacao TCM_025849 I 0.717
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.717
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.717
Bra040311 Brassica rapa Bra040311 I 0.717
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.717
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.717
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.717
Lus10024877.g Linum usitatissimum Lus10024877.g I 0.717
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.717
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.717
Bra036436 Brassica rapa Bra036436 I 0.717
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.717
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.717
Bo4g195520 Brassica oleracea Bo4g195520 I 0.717
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.717
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.717
Si040019m.g Setaria italica Si040019m.g I 0.717
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.717
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.717
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.717
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.717
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.717
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.717
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.717
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.717
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.717
OBART03G03830 Oryza barthii OBART03G03830 I 0.717
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.717
Bo1g153580 Brassica oleracea Bo1g153580 I 0.717
OS03G0149100 Oryza sativa OS03G0149100 I 0.717
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.717
Cla007069 Citrullus lanatus Cla007069 I 0.717
OB03G13890 Oryza brachyantha OB03G13890 I 0.717
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.717
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.717
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.716
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.709
MDP0000145761 Malus domestica MDP0000145761 I 0.707
AC149818.2_FG009 Zea mays AC149818.2_FG009 I 0.707
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.707
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.707
LBD18 Arabidopsis thaliana AT2G45420 D 0.707
Lus10014757.g Linum usitatissimum Lus10014757.g I 0.707
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.707
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.707
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.707
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.707
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.707
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.707
Pm020629 Prunus mume Pm020629 I 0.707
OB03G20590 Oryza brachyantha OB03G20590 I 0.707
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.707
Cla006088 Citrullus lanatus Cla006088 I 0.707
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.707
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.707
GLYMA13G18191 Glycine max GLYMA13G18191 I 0.707
GLYMA02G27230 Glycine max GLYMA02G27230 I 0.707
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.707
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.707
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.707
Bo4g024620 Brassica oleracea Bo4g024620 I 0.707
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.707
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.707
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.707
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.707
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.707
Bra004910 Brassica rapa Bra004910 I 0.707
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.707
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.707
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.707
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.707
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.707
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.707
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.707
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.707
Lus10000707.g Linum usitatissimum Lus10000707.g I 0.707
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.707
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.703