Bra000257 (Brassica rapa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bra000257 T245029_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG

CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.939 0.939
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR

YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.939 0.939
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN

NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.939 0.939
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.737 0.737
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.737 0.737
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG

CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.727 0.727
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD

HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra000257.1-P LOB 15 114

Links

Other LOB family TFs
Other Brassica rapa TFs

319 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R015780 Calypte anna Aan_R015780 N 0.000
Alligator_sinensis_CCG021728.1 Alligator sinensis Alligator_sinensis_CCG021728.1 N 0.000
Brh_R000153 Buceros rhinoceros Brh_R000153 N 0.000
Cmyd_10020478 Chelonia mydas Cmyd_10020478 N 0.000
ENSACAG00000001074 Anolis carolinensis ENSACAG00000001074 N 0.000
ENSAMXG00000025035 Astyanax mexicanus ENSAMXG00000025035 N 0.000
ZNF831 Bos taurus ENSBTAG00000011940 N 0.000
ZNF831 Canis familiaris ENSCAFG00000012242 N 0.000
ZNF831 Cavia porcellus ENSCPOG00000004730 N 0.000
ENSCSAG00000015605 Chlorocebus sabaeus ENSCSAG00000015605 N 0.000
ZNF831 Dasypus novemcinctus ENSDNOG00000039522 N 0.000
ENSDORG00000000484 Dipodomys ordii ENSDORG00000000484 N 0.000
ZNF831 Equus caballus ENSECAG00000004219 N 0.000
ENSFALG00000010699 Ficedula albicollis ENSFALG00000010699 N 0.000
ZNF831 Felis catus ENSFCAG00000000850 N 0.000
ZNF831 Homo sapiens ENSG00000124203 N 0.000
ENSGACG00000011250 Gasterosteus aculeatus ENSGACG00000011250 N 0.000
ZNF831 Gorilla gorilla ENSGGOG00000016623 N 0.000
ENSGMOG00000017750 Gadus morhua ENSGMOG00000017750 N 0.000
ZNF831 Loxodonta africana ENSLAFG00000027534 N 0.000
ENSMEUG00000011902 Macropus eugenii ENSMEUG00000011902 N 0.000
ENSMGAG00000015550 Meleagris gallopavo ENSMGAG00000015550 N 0.000
ZNF831 Myotis lucifugus ENSMLUG00000002710 N 0.000
ENSMPUG00000007096 Mustela putorius furo ENSMPUG00000007096 N 0.000
Zfp831 Mus musculus ENSMUSG00000050600 N 0.000
ENSNLEG00000009590 Nomascus leucogenys ENSNLEG00000009590 N 0.000
ENSOARG00000016025 Ovis aries ENSOARG00000016025 N 0.000
ZNF831 Oryctolagus cuniculus ENSOCUG00000016865 N 0.000
ZNF831 Otolemur garnettii ENSOGAG00000026401 N 0.000
ENSP00000360069 Macaca fascicularis ENSP00000360069 N 0.000
ENSP00000360069-D1 Bos grunniens ENSP00000360069-D1 N 0.000
ENSPANG00000000370 Papio anubis ENSPANG00000000370 N 0.000
ENSPFOG00000008819 Poecilia formosa ENSPFOG00000008819 N 0.000
ENSPPYG00000011183 Pongo abelii ENSPPYG00000011183 N 0.000
ENSPSIG00000005947 Pelodiscus sinensis ENSPSIG00000005947 N 0.000
ZNF831 Pan troglodytes ENSPTRG00000013683 N 0.000
ZNF831 Pteropus vampyrus ENSPVAG00000005227 N 0.000
Zfp831 Rattus norvegicus ENSRNOG00000024693 N 0.000
ENSSHAG00000011841 Sarcophilus harrisii ENSSHAG00000011841 N 0.000
ZNF831 Sus scrofa ENSSSCG00000007526 N 0.000
ENSSTOG00000020220 Ictidomys tridecemlineatus ENSSTOG00000020220 N 0.000
ENSTGUG00000008011 Taeniopygia guttata ENSTGUG00000008011 N 0.000
ZNF831 Tursiops truncatus ENSTTRG00000009388 N 0.000
ENSXMAG00000013985 Xiphophorus maculatus ENSXMAG00000013985 N 0.000
Gfo_R009549 Geospiza fortis Gfo_R009549 N 0.000
Myotis_brandtii_ZNF831_10023550 Myotis brandtii Myotis_brandtii_ZNF831_10023550 N 0.000
Ogr15311 Ophisaurus gracilis Ogr15311 N 0.000
Tal_R006729 Tyto alba Tal_R006729 N 0.000