CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra008514
(
Brassica rapa
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
Bra008514
T245039_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.929
0.929
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.929
0.929
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.818
0.818
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.818
0.818
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra008514.1-P
LOB
15
114
PCGACKFLRRKCVPGCIFAPYFDSDQGAAHFAAVHKVFGASNVSKLLHHIPEHKRADAVVSICFEAQSRLRDPIYGCVSHIVSLQQQVVSLQNELSYVQA
Links
Other
LOB
family TFs
Other
Brassica rapa
TFs
232 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo2g097560
Brassica oleracea
Bo2g097560
I
1.000
Bra037323
Brassica rapa
Bra037323
I
0.939
Bo9g002160
Brassica oleracea
Bo9g002160
I
0.939
Thhalv10028937m.g
Eutrema salsugineum
Thhalv10028937m.g
I
0.929
LBD30
Arabidopsis thaliana
AT4G00220
D
0.929
Bostr.14547s0031
Boechera stricta
Bostr.14547s0031
I
0.929
LBD30
Arabidopsis lyrata
fgenesh2_kg.6__3680__AT4G00220.1
I
0.919
Cagra.1261s0014
Capsella grandiflora
Cagra.1261s0014
I
0.909
Carubv10001875m.g
Capsella rubella
Carubv10001875m.g
I
0.909
Gorai.004G161100
Gossypium raimondii
Gorai.004G161100
I
0.869
SapurV1A.0532s0190
Salix purpurea
SapurV1A.0532s0190
I
0.869
PRUPE_ppa010383mg
Prunus persica
PRUPE_ppa010383mg
I
0.859
Cucsa.362840
Cucumis sativus
Cucsa.362840
I
0.859
Ciclev10021992m.g
Citrus clementina
Ciclev10021992m.g
I
0.859
cassava28659.m1
Manihot esculenta
cassava28659.m1
I
0.859
Pm017936
Prunus mume
Pm017936
I
0.859
orange1.1g036534m.g
Citrus sinensis
orange1.1g036534m.g
I
0.859
30174.m008898
Ricinus communis
30174.m008898
I
0.859
cassava36912.valid.m1
Manihot esculenta
cassava36912.valid.m1
I
0.859
Cla007068
Citrullus lanatus
Cla007068
I
0.859
Gorai.008G114400
Gossypium raimondii
Gorai.008G114400
I
0.848
GSMUA_Achr5G11330_001
Musa acuminata
GSMUA_Achr5G11330_001
I
0.848
Eucgr.E01414
Eucalyptus grandis
Eucgr.E01414
I
0.848
LBD30
Vitis vinifera
VIT_15s0048g00830
I
0.838
LPERR03G09330
Leersia perrieri
LPERR03G09330
I
0.828
Solyc01g091420.1
Solanum lycopersicum
Solyc01g091420.1
I
0.828
Pavir.J34872
Panicum virgatum
Pavir.J34872
I
0.828
GRMZM2G150594
Zea mays
GRMZM2G150594
I
0.828
GSMUA_Achr1G02520_001
Musa acuminata
GSMUA_Achr1G02520_001
I
0.828
OGLUM03G10340
Oryza glumaepatula
OGLUM03G10340
I
0.828
OPUNC03G10080
Oryza punctata
OPUNC03G10080
I
0.828
ORUFI03G10670
Oryza rufipogon
ORUFI03G10670
I
0.828
ORGLA03G0100400
Oryza glaberrima
ORGLA03G0100400
I
0.828
OS03G0246900
Oryza sativa
OS03G0246900
I
0.828
gene19355-v1.0-hybrid
Fragaria vesca
gene19355-v1.0-hybrid
I
0.828
OBART03G10450
Oryza barthii
OBART03G10450
I
0.828
OMERI03G09680
Oryza meridionalis
OMERI03G09680
I
0.828
Sb01g041130
Sorghum bicolor
Sb01g041130
I
0.828
GRMZM2G110913
Zea mays
GRMZM2G110913
I
0.828
BGIOSGA011118
Oryza indica
BGIOSGA011118
I
0.828
Bra040311
Brassica rapa
Bra040311
I
0.828
Bo4g024620
Brassica oleracea
Bo4g024620
I
0.828
GLYMA03G02620
Glycine max
GLYMA03G02620
I
0.828
BRADI1G68170
Brachypodium distachyon
BRADI1G68170
I
0.818
LBD18
Arabidopsis lyrata
fgenesh2_kg.4__2737__AT2G45420.1
I
0.818
Bostr.25993s0233
Boechera stricta
Bostr.25993s0233
I
0.818
Cagra.0698s0021
Capsella grandiflora
Cagra.0698s0021
I
0.818
Bo4g195520
Brassica oleracea
Bo4g195520
I
0.818
Bra004910
Brassica rapa
Bra004910
I
0.818
GSMUA_Achr2G11240_001
Musa acuminata
GSMUA_Achr2G11240_001
I
0.818
Aquca_013_00578
Aquilegia coerulea
Aquca_013_00578
I
0.818
Pavir.Ib02517
Panicum virgatum
Pavir.Ib02517
I
0.818
Thhalv10001791m.g
Eutrema salsugineum
Thhalv10001791m.g
I
0.818
Carubv10025050m.g
Capsella rubella
Carubv10025050m.g
I
0.818
LBD18
Arabidopsis thaliana
AT2G45420
D
0.818
Traes_4AS_5971FF832
Triticum aestivum
Traes_4AS_5971FF832
I
0.808
PK25573.1
Cannabis sativa
PK25573.1
I
0.808
AMTR_s00041p00044170
Amborella trichopoda
AMTR_s00041p00044170
I
0.808
GSMUA_AchrUn_randomG10470_001
Musa acuminata
GSMUA_AchrUn_randomG10470_001
I
0.808
MLOC_55239
Hordeum vulgare
MLOC_55239
I
0.808
SapurV1A.0024s0780
Salix purpurea
SapurV1A.0024s0780
I
0.808
Traes_4BL_3FB579782
Triticum aestivum
Traes_4BL_3FB579782
I
0.808
Traes_4DL_A2012EA68
Triticum aestivum
Traes_4DL_A2012EA68
I
0.808
LjSGA_002536.2
Lotus japonicus
LjSGA_002536.2
I
0.808
Pavir.Ia02614
Panicum virgatum
Pavir.Ia02614
I
0.808
LBD20
Arabidopsis thaliana
AT3G03760
I
0.798
Bo1g153580
Brassica oleracea
Bo1g153580
I
0.798
Cagra.2098s0013
Capsella grandiflora
Cagra.2098s0013
I
0.798
Carubv10015417m.g
Capsella rubella
Carubv10015417m.g
I
0.798
OB10G12360
Oryza brachyantha
OB10G12360
I
0.798
MTR_8g036085
Medicago truncatula
MTR_8g036085
I
0.798
Thhalv10021301m.g
Eutrema salsugineum
Thhalv10021301m.g
I
0.798
Bra036436
Brassica rapa
Bra036436
I
0.798
GLYMA01G34540
Glycine max
GLYMA01G34540
I
0.798
Bostr.19046s0098
Boechera stricta
Bostr.19046s0098
I
0.798
LBD20
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_3000301
I
0.798
LBD20
Vitis vinifera
VIT_08s0056g01650
I
0.788
Aquca_009_00560
Aquilegia coerulea
Aquca_009_00560
I
0.788
PRUPE_ppa017589mg
Prunus persica
PRUPE_ppa017589mg
I
0.788
mgf006429m
Mimulus guttatus
mgf006429m
I
0.788
gene19356-v1.0-hybrid
Fragaria vesca
gene19356-v1.0-hybrid
I
0.788
GLYMA09G40500
Glycine max
GLYMA09G40500
I
0.788
MTR_8g036105
Medicago truncatula
MTR_8g036105
I
0.788
MTR_7g074990
Medicago truncatula
MTR_7g074990
I
0.788
GLYMA03G02631
Glycine max
GLYMA03G02631
I
0.788
Gorai.007G346200
Gossypium raimondii
Gorai.007G346200
I
0.788
OPUNC10G02630
Oryza punctata
OPUNC10G02630
I
0.778
ORUFI10G03180
Oryza rufipogon
ORUFI10G03180
I
0.778
OGLUM10G03230
Oryza glumaepatula
OGLUM10G03230
I
0.778
Eucgr.K01522
Eucalyptus grandis
Eucgr.K01522
I
0.778
ORGLA10G0025200
Oryza glaberrima
ORGLA10G0025200
I
0.778
orange1.1g042813m.g
Citrus sinensis
orange1.1g042813m.g
I
0.778
Ciclev10021843m.g
Citrus clementina
Ciclev10021843m.g
I
0.778
GRMZM2G076327
Zea mays
GRMZM2G076327
I
0.778
BGIOSGA032254
Oryza indica
BGIOSGA032254
I
0.778
GLYMA01G34523
Glycine max
GLYMA01G34523
I
0.778
TCM_025849
Theobroma cacao
TCM_025849
I
0.778
ONIVA10G03250
Oryza nivara
ONIVA10G03250
I
0.778
Ca_19598
Cicer arietinum
Ca_19598
I
0.778
Pm017935
Prunus mume
Pm017935
I
0.778
30174.m008897
Ricinus communis
30174.m008897
I
0.778
OS10G0162600
Oryza sativa
OS10G0162600
I
0.778
cassava28672.m1
Manihot esculenta
cassava28672.m1
I
0.768
BRADI3G22510
Brachypodium distachyon
BRADI3G22510
I
0.768
Ciclev10022291m.g
Citrus clementina
Ciclev10022291m.g
I
0.768
Pavir.Ia03917
Panicum virgatum
Pavir.Ia03917
I
0.768
PRUPE_ppa024802mg
Prunus persica
PRUPE_ppa024802mg
I
0.768
evm.TU.supercontig_18.118
Carica papaya
evm.TU.supercontig_18.118
I
0.768
Pm028642
Prunus mume
Pm028642
I
0.768
PGSC0003DMG400022454
Solanum tuberosum
PGSC0003DMG400022454
I
0.768
evm.TU.supercontig_18.117
Carica papaya
evm.TU.supercontig_18.117
I
0.768
Cla007069
Citrullus lanatus
Cla007069
I
0.768
GLYMA18G45320
Glycine max
GLYMA18G45320
I
0.768
MDP0000322059
Malus domestica
MDP0000322059
I
0.768
MDP0000429067
Malus domestica
MDP0000429067
I
0.768
MDP0000254224
Malus domestica
MDP0000254224
I
0.768
Aquca_013_00580
Aquilegia coerulea
Aquca_013_00580
I
0.768
VIT_15s0048g00840
Vitis vinifera
VIT_15s0048g00840
I
0.758
cassava25975.m1
Manihot esculenta
cassava25975.m1
I
0.758
cassava15337.m1
Manihot esculenta
cassava15337.m1
I
0.758
Cla002965
Citrullus lanatus
Cla002965
I
0.758
gw1.261.12.1
Physcomitrella patens
gw1.261.12.1
I
0.758
Solyc01g098220.1
Solanum lycopersicum
Solyc01g098220.1
I
0.758
Gorai.007G091600
Gossypium raimondii
Gorai.007G091600
I
0.758
POPTR_0014s06590
Populus trichocarpa
POPTR_0014s06590
I
0.758
POPTR_0002s14990
Populus trichocarpa
POPTR_0002s14990
I
0.758
POPTR_0013s06070
Populus trichocarpa
POPTR_0013s06070
I
0.758
TCM_005496
Theobroma cacao
TCM_005496
I
0.758
SapurV1A.0532s0200
Salix purpurea
SapurV1A.0532s0200
I
0.758
PGSC0003DMG402012772
Solanum tuberosum
PGSC0003DMG402012772
I
0.758
SapurV1A.0024s0790
Salix purpurea
SapurV1A.0024s0790
I
0.758
30072.m000955
Ricinus communis
30072.m000955
I
0.758
chr1.CM1255.40.nc
Lotus japonicus
chr1.CM1255.40.nc
I
0.747
Lus10009298.g
Linum usitatissimum
Lus10009298.g
I
0.747
cassava40137.m1
Manihot esculenta
cassava40137.m1
I
0.747
Cucsa.338130
Cucumis sativus
Cucsa.338130
I
0.747
gw1.157.74.1
Physcomitrella patens
gw1.157.74.1
I
0.747
Cucsa.257700
Cucumis sativus
Cucsa.257700
I
0.747
PK23185.1
Cannabis sativa
PK23185.1
I
0.747
TCM_005497
Theobroma cacao
TCM_005497
I
0.747
OLONG_001985
Oryza longistaminata
OLONG_001985
I
0.747
Solyc01g091400.2
Solanum lycopersicum
Solyc01g091400.2
I
0.747
POPTR_0014s06580
Populus trichocarpa
POPTR_0014s06580
I
0.747
POPTR_0002s14980
Populus trichocarpa
POPTR_0002s14980
I
0.745
gw1.61.81.1
Physcomitrella patens
gw1.61.81.1
I
0.737
Sb07g023810
Sorghum bicolor
Sb07g023810
I
0.737
Sb01g024400
Sorghum bicolor
Sb01g024400
I
0.737
MTR_7g075230
Medicago truncatula
MTR_7g075230
I
0.737
OB08G30680
Oryza brachyantha
OB08G30680
I
0.737
OB03G20590
Oryza brachyantha
OB03G20590
I
0.737
Cucsa.362830
Cucumis sativus
Cucsa.362830
I
0.737
gw1.35.169.1
Physcomitrella patens
gw1.35.169.1
I
0.737
gene24461-v1.0-hybrid
Fragaria vesca
gene24461-v1.0-hybrid
I
0.737
Cla021625
Citrullus lanatus
Cla021625
I
0.737
Eucgr.E01415
Eucalyptus grandis
Eucgr.E01415
I
0.737
Ca_20428
Cicer arietinum
Ca_20428
I
0.737
chr1.LjT38H23.30.nd
Lotus japonicus
chr1.LjT38H23.30.nd
I
0.737
Gorai.008G114300
Gossypium raimondii
Gorai.008G114300
I
0.727
GRMZM2G092542
Zea mays
GRMZM2G092542
I
0.727
evm.TU.supercontig_50.43
Carica papaya
evm.TU.supercontig_50.43
I
0.727
mgf020735m
Mimulus guttatus
mgf020735m
I
0.727
LPERR03G03470
Leersia perrieri
LPERR03G03470
I
0.727
GLYMA19G34590
Glycine max
GLYMA19G34590
I
0.727
GLYMA19G30200
Glycine max
GLYMA19G30200
I
0.727
LPERR08G20530
Leersia perrieri
LPERR08G20530
I
0.727
Si015156m.g
Setaria italica
Si015156m.g
I
0.727
MTR_7g096530
Medicago truncatula
MTR_7g096530
I
0.727
Bo3g036000
Brassica oleracea
Bo3g036000
I
0.720
OBART08G23860
Oryza barthii
OBART08G23860
I
0.717
OLONG_010223
Oryza longistaminata
OLONG_010223
I
0.717
OBART03G03830
Oryza barthii
OBART03G03830
I
0.717
Gorai.001G251600
Gossypium raimondii
Gorai.001G251600
I
0.717
OMERI07G01660
Oryza meridionalis
OMERI07G01660
I
0.717
OGLUM08G25340
Oryza glumaepatula
OGLUM08G25340
I
0.717
OMERI08G18670
Oryza meridionalis
OMERI08G18670
I
0.717
Pavir.Ia04220
Panicum virgatum
Pavir.Ia04220
I
0.717
GLYMA10G04050
Glycine max
GLYMA10G04050
I
0.717
GLYMA03G31830
Glycine max
GLYMA03G31830
I
0.717
BGIOSGA026473
Oryza indica
BGIOSGA026473
I
0.717
BGIOSGA011445
Oryza indica
BGIOSGA011445
I
0.717
GLYMA13G18210
Glycine max
GLYMA13G18210
I
0.717
Pavir.Ib00283
Panicum virgatum
Pavir.Ib00283
I
0.717
OB03G13890
Oryza brachyantha
OB03G13890
I
0.717
Pavir.Fa00011
Panicum virgatum
Pavir.Fa00011
I
0.717
MTR_1g070205
Medicago truncatula
MTR_1g070205
I
0.717
ONIVA03G03580
Oryza nivara
ONIVA03G03580
I
0.717
MDP0000145761
Malus domestica
MDP0000145761
I
0.717
OPUNC03G03520
Oryza punctata
OPUNC03G03520
I
0.717
Ca_12213
Cicer arietinum
Ca_12213
I
0.717
Sb01g046990
Sorghum bicolor
Sb01g046990
I
0.717
ORUFI08G26340
Oryza rufipogon
ORUFI08G26340
I
0.717
OS08G0563400
Oryza sativa
OS08G0563400
I
0.717
VIT_07s0005g03020
Vitis vinifera
VIT_07s0005g03020
I
0.717
Si040019m.g
Setaria italica
Si040019m.g
I
0.717
TCM_004106
Theobroma cacao
TCM_004106
I
0.717
ORUFI03G03550
Oryza rufipogon
ORUFI03G03550
I
0.717
OS03G0149100
Oryza sativa
OS03G0149100
I
0.717
OPUNC08G21770
Oryza punctata
OPUNC08G21770
I
0.717
ORGLA03G0035900
Oryza glaberrima
ORGLA03G0035900
I
0.717
ORGLA08G0192400
Oryza glaberrima
ORGLA08G0192400
I
0.717
ONIVA09G01330
Oryza nivara
ONIVA09G01330
I
0.717
Pm020629
Prunus mume
Pm020629
I
0.707
Al_scaffold_0004_3226
Arabidopsis lyrata
Al_scaffold_0004_3226
I
0.707
SapurV1A.0006s0980
Salix purpurea
SapurV1A.0006s0980
I
0.707
LjT35F15.90.nd
Lotus japonicus
LjT35F15.90.nd
I
0.707
mgf020773m
Mimulus guttatus
mgf020773m
I
0.707
Cucsa.053450
Cucumis sativus
Cucsa.053450
I
0.707
Ca_07763
Cicer arietinum
Ca_07763
I
0.707
Cla006088
Citrullus lanatus
Cla006088
I
0.707
Ca_12214
Cicer arietinum
Ca_12214
I
0.707
BRADI3G12550
Brachypodium distachyon
BRADI3G12550
I
0.707
GLYMA10G04040
Glycine max
GLYMA10G04040
I
0.707
Cla006087
Citrullus lanatus
Cla006087
I
0.707
Cucsa.053440
Cucumis sativus
Cucsa.053440
I
0.707
MTR_7g096610
Medicago truncatula
MTR_7g096610
I
0.707
Gorai.007G144500
Gossypium raimondii
Gorai.007G144500
I
0.707
Carubv10002489m.g
Capsella rubella
Carubv10002489m.g
I
0.707
Lus10000613.g
Linum usitatissimum
Lus10000613.g
I
0.707
Carubv10025477m.g
Capsella rubella
Carubv10025477m.g
I
0.707
Gorai.004G073300
Gossypium raimondii
Gorai.004G073300
I
0.707
gene08250-v1.0-hybrid
Fragaria vesca
gene08250-v1.0-hybrid
I
0.707
29883.m002035
Ricinus communis
29883.m002035
I
0.707
Lus10033873.g
Linum usitatissimum
Lus10033873.g
I
0.707
POPTR_0002s04200
Populus trichocarpa
POPTR_0002s04200
I
0.707
Bostr.25993s0234
Boechera stricta
Bostr.25993s0234
I
0.707
PRUPE_ppa025349mg
Prunus persica
PRUPE_ppa025349mg
I
0.707
PRUPE_ppa025889mg
Prunus persica
PRUPE_ppa025889mg
I
0.707
evm.TU.supercontig_50.42
Carica papaya
evm.TU.supercontig_50.42
I
0.707
Cagra.0698s0022
Capsella grandiflora
Cagra.0698s0022
I
0.707
POPTR_0002s04210
Populus trichocarpa
POPTR_0002s04210
I
0.707
Cagra.1261s0013
Capsella grandiflora
Cagra.1261s0013
I
0.707
Aquca_034_00401
Aquilegia coerulea
Aquca_034_00401
I
0.707