CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra009161
(
Brassica rapa
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
Bra009161
T245040_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra009161.1-P
LOB
7
106
SCGACKFLRRKCNIDCVFSPYFSYEQASSHFSAVHKVFGASNVSKHLLSLPLHQRSAAAITISYEALSRMCDPVYGCVAHIFALQQQVMTLQEEIEFLGT
Links
Other
LOB
family TFs
Other
Brassica rapa
TFs
28 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo9g176580
Brassica oleracea
Bo9g176580
N
0.980
LBD33
Arabidopsis lyrata
Al_scaffold_0006_527
N
0.919
Bostr.13129s0366
Boechera stricta
Bostr.13129s0366
N
0.909
Carubv10002921m.g
Capsella rubella
Carubv10002921m.g
N
0.899
Cagra.2117s0054
Capsella grandiflora
Cagra.2117s0054
N
0.899
LBD33
Arabidopsis thaliana
AT5G06080
N
0.899
Thhalv10015772m.g
Eutrema salsugineum
Thhalv10015772m.g
N
0.828
Eucgr.G02955
Eucalyptus grandis
Eucgr.G02955
I
0.808
LBD33
Vitis vinifera
VIT_13s0019g02060
N
0.798
evm.TU.supercontig_1.438
Carica papaya
evm.TU.supercontig_1.438
I
0.778
MTR_5g080470
Medicago truncatula
MTR_5g080470
N
0.778
TCM_042730
Theobroma cacao
TCM_042730
I
0.778
POPTR_0010s20800
Populus trichocarpa
POPTR_0010s20800
I
0.768
Ciclev10033354m.g
Citrus clementina
Ciclev10033354m.g
I
0.768
MDP0000123797
Malus domestica
MDP0000123797
N
0.758
SapurV1A.0281s0190
Salix purpurea
SapurV1A.0281s0190
I
0.758
30143.m001171
Ricinus communis
30143.m001171
N
0.758
GLYMA14G07260
Glycine max
GLYMA14G07260
N
0.758
Cucsa.165150
Cucumis sativus
Cucsa.165150
N
0.758
Ca_16122
Cicer arietinum
Ca_16122
N
0.758
cassava34632.m1
Manihot esculenta
cassava34632.m1
N
0.758
PRUPE_ppa018815mg
Prunus persica
PRUPE_ppa018815mg
N
0.747
Cla004059
Citrullus lanatus
Cla004059
N
0.747
Gorai.011G267700
Gossypium raimondii
Gorai.011G267700
I
0.747
Pm018835
Prunus mume
Pm018835
N
0.747
GLYMA02G41710
Glycine max
GLYMA02G41710
N
0.737
MDP0000133936
Malus domestica
MDP0000133936
N
0.737
gene26330-v1.0-hybrid
Fragaria vesca
gene26330-v1.0-hybrid
N
0.727