Bra035860 (Brassica rapa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bra035860 T245083_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH

DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.970 0.970
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN

NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra035860.1-P LOB 12 110

Links

Other LOB family TFs
Other Brassica rapa TFs

173 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LOB Arabidopsis lyrata scaffold_802995.1 I 0.970
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.970
Bra038606 Brassica rapa Bra038606 I 0.970
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.970
Bo3g104760 Brassica oleracea Bo3g104760 I 0.970
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.970
LOB Arabidopsis thaliana AT5G63090 D 0.970
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.960
Bo9g017470 Brassica oleracea Bo9g017470 I 0.960
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.960
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.949
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.939
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.939
Cla019510 Citrullus lanatus Cla019510 I 0.939
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.939
30147.m013890 Ricinus communis 30147.m013890 I 0.939
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.939
MDP0000254288 Malus domestica MDP0000254288 I 0.939
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.939
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.939
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.939
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.939
TCM_012190 Theobroma cacao TCM_012190 I 0.939
LOB Vitis vinifera VIT_17s0000g09010 I 0.939
MDP0000130659 Malus domestica MDP0000130659 I 0.939
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.929
Pm024312 Prunus mume Pm024312 I 0.929
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.929
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.929
Ca_08824 Cicer arietinum Ca_08824 I 0.929
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.919
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.919
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.919
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.919
mgf024603m Mimulus guttatus mgf024603m I 0.919
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.919
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.919
PK21510.1 Cannabis sativa PK21510.1 I 0.909
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.909
Ca_07463 Cicer arietinum Ca_07463 I 0.909
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.909
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.899
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.899
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.899
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.899
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.889
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.889
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.889
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.889
Si002632m.g Setaria italica Si002632m.g I 0.889
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.889
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.889
OB01G14220 Oryza brachyantha OB01G14220 I 0.889
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.889
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.879
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.879
OBART01G04470 Oryza barthii OBART01G04470 I 0.879
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.879
Pm015649 Prunus mume Pm015649 I 0.879
PK26472.1 Cannabis sativa PK26472.1 I 0.879
OS01G0169400 Oryza sativa OS01G0169400 I 0.879
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.879
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.879
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.879
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.879
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.879
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.869
29917.m001993 Ricinus communis 29917.m001993 I 0.869
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.869
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.869
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.869
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.869
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.869
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.869
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.869
mgf016361m Mimulus guttatus mgf016361m I 0.869
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.869
F775_25656 Aegilops tauschii F775_25656 I 0.869
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.869
Ca_24372 Cicer arietinum Ca_24372 I 0.859
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.859
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.859
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.859
TCM_016952 Theobroma cacao TCM_016952 I 0.859
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.859
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.859
MDP0000848210 Malus domestica MDP0000848210 I 0.859
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.848
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.848
Cla010600 Citrullus lanatus Cla010600 I 0.848
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.838
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.838
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.838
Cla017388 Citrullus lanatus Cla017388 I 0.838
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.838
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.838
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.828
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.828
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.828
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.828
LjSGA_017893.1 Lotus japonicus LjSGA_017893.1 I 0.824
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.818
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.818
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.818
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.808
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.808
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.808
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.808
Cla003499 Citrullus lanatus Cla003499 I 0.808
PK18922.1 Cannabis sativa PK18922.1 I 0.807
mgf003146m Mimulus guttatus mgf003146m I 0.798
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.796
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.778
Bo7g085860 Brassica oleracea Bo7g085860 I 0.778
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.778
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.778
LBD25 Arabidopsis thaliana AT3G27650 I 0.778
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.778
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.778
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.778
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.778
Bra025294 Brassica rapa Bra025294 I 0.778
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.768
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.758
Bo9g008330 Brassica oleracea Bo9g008330 I 0.758
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.758
Bra039072 Brassica rapa Bra039072 I 0.758
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.747
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.747
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.747
MDP0000643326 Malus domestica MDP0000643326 I 0.747
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.737
MDP0000273432 Malus domestica MDP0000273432 I 0.737
Cla005851 Citrullus lanatus Cla005851 I 0.737
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.737
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.737
AS2 Vitis vinifera VIT_00s0340g00090 I 0.737
Ca_20200 Cicer arietinum Ca_20200 I 0.737
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.737
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.737
Bo2g144870 Brassica oleracea Bo2g144870 I 0.737
Bra033019 Brassica rapa Bra033019 I 0.737
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.737
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.737
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.737
mgf014755m Mimulus guttatus mgf014755m I 0.737
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.727
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.727
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.727
Bra039733 Brassica rapa Bra039733 I 0.727
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.727
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.727
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.727
LBD6 Arabidopsis thaliana AT1G65620 D 0.727
29929.m004500 Ricinus communis 29929.m004500 I 0.727
Bo2g051420 Brassica oleracea Bo2g051420 I 0.727
TCM_024217 Theobroma cacao TCM_024217 I 0.727
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.727
GSMUA_Achr10G20760_001 Musa acuminata GSMUA_Achr10G20760_001 I 0.725
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.717
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.717
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.717
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.717
TRIUR3_10339 Triticum urartu TRIUR3_10339 I 0.717
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.717
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.717
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.717
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.717
OLONG_009404 Oryza longistaminata OLONG_009404 I 0.709
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.707
Bo2g167820 Brassica oleracea Bo2g167820 I 0.707
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.707
PK29334.1 Cannabis sativa PK29334.1 I 0.703