Bra035860 (Brassica rapa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bra035860 T245083_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH

DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.970 0.970
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN

NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra035860.1-P LOB 12 110

Links

Other LOB family TFs
Other Brassica rapa TFs

173 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000019030 Ailuropoda melanoleuca ENSAMEG00000019030 I 0.000
Alligator_sinensis_CCG002586.1 Alligator sinensis Alligator_sinensis_CCG002586.1 I 0.000
ENSAPLG00000001417 Anas platyrhynchos ENSAPLG00000001417 I 0.000
ENSACAG00000011821 Anolis carolinensis ENSACAG00000011821 I 0.000
Afo_R003467 Aptenodytes forsteri Afo_R003467 I 0.000
ENSAMXG00000025611 Astyanax mexicanus ENSAMXG00000025611 I 0.000
ENSP00000275461-D1 Bos grunniens ENSP00000275461-D1 I 0.000
FERD3L Bos taurus ENSBTAG00000039955 I 0.000
Brh_R002964 Buceros rhinoceros Brh_R002964 I 0.000
Aan_R001045 Calypte anna Aan_R001045 I 0.000
FERD3L Canis familiaris ENSCAFG00000002506 I 0.000
CapteG151649 Capitella teleta CapteG151649 I 0.000
Cmyd_10011491 Chelonia mydas Cmyd_10011491 I 0.000
ENSCSAG00000019609 Chlorocebus sabaeus ENSCSAG00000019609 I 0.000
ferd3l Danio rerio ENSDARG00000092160 I 0.000
FERD3L Dasypus novemcinctus ENSDNOG00000037813 I 0.000
YQE_05939 Dendroctonus ponderosae YQE_05939 I 0.000
Ferd3l Dipodomys ordii ENSDORG00000012867 I 0.000
FERD3L Equus caballus ENSECAG00000002518 I 0.000
FERD3L Erinaceus europaeus ENSEEUG00000004309 I 0.000
FERD3L Felis catus ENSFCAG00000010289 I 0.000
ENSFALG00000014487 Ficedula albicollis ENSFALG00000014487 I 0.000
FERD3L Gallus gallus ENSGALG00000010862 I 0.000
Gfo_R002784 Geospiza fortis Gfo_R002784 I 0.000
FERD3L Gorilla gorilla ENSGGOG00000021943 I 0.000
FERD3L Homo sapiens ENSG00000146618 D 0.000
ENSSTOG00000025739 Ictidomys tridecemlineatus ENSSTOG00000025739 I 0.000
ENSLACG00000013215 Latimeria chalumnae ENSLACG00000013215 I 0.000
ENSLOCG00000018351 Lepisosteus oculatus ENSLOCG00000018351 I 0.000
FERD3L Loxodonta africana ENSLAFG00000012782 I 0.000
LCUP001463 Lucilia cuprina LCUP001463 I 0.000
LLOJ008652 Lutzomyia longipalpis LLOJ008652 I 0.000
ENSP00000275461 Macaca fascicularis ENSP00000275461 I 0.000
FERD3L Macaca mulatta ENSMMUG00000011174 I 0.000
FERD3L Meleagris gallopavo ENSMGAG00000015843 I 0.000
ENSMICG00000010110 Microcebus murinus ENSMICG00000010110 I 0.000
MDOA011992 Musca domestica MDOA011992 I 0.000
Ferd3l Mus musculus ENSMUSG00000046518 I 0.000
Myotis_brandtii_FERD3L_10031741 Myotis brandtii Myotis_brandtii_FERD3L_10031741 I 0.000
FERD3L Myotis lucifugus ENSMLUG00000006930 I 0.000
ENSNLEG00000019265 Nomascus leucogenys ENSNLEG00000019265 I 0.000
FERD3L Ochotona princeps ENSOPRG00000004265 I 0.000
Ocbimv22002150m.g Octopus bimaculoides Ocbimv22002150m.g I 0.000
Ogr11551 Ophisaurus gracilis Ogr11551 I 0.000
FERD3L Ornithorhynchus anatinus ENSOANG00000009615 I 0.000
FERD3L Oryctolagus cuniculus ENSOCUG00000016121 I 0.000
FERD3L Oryzias latipes ENSORLG00000004008 I 0.000
FERD3L Otolemur garnettii ENSOGAG00000014773 I 0.000
ENSOARG00000008159 Ovis aries ENSOARG00000008159 I 0.000
FERD3L Pan troglodytes ENSPTRG00000018961 I 0.000
ENSPANG00000010936 Papio anubis ENSPANG00000010936 I 0.000
ENSPSIG00000000691 Pelodiscus sinensis ENSPSIG00000000691 I 0.000
PPAI004805 Phlebotomus papatasi PPAI004805 I 0.000
ENSPPYG00000017753 Pongo abelii ENSPPYG00000017753 I 0.000
FERD3L Procavia capensis ENSPCAG00000013680 I 0.000
FERD3L Pteropus vampyrus ENSPVAG00000001711 I 0.000
Ferd3l Rattus norvegicus ENSRNOG00000011091 I 0.000
SMAR006706 Strigamia maritima SMAR006706 I 0.000
FERD3L Sus scrofa ENSSSCG00000015371 I 0.000
FERD3L Taeniopygia guttata ENSTGUG00000002644 I 0.000
ENSTSYG00000010121 Tarsius syrichta ENSTSYG00000010121 I 0.000
tetur07g05370 Tetranychus urticae tetur07g05370 I 0.000
FERD3L Tupaia belangeri ENSTBEG00000003400 I 0.000
ferd3l Xenopus tropicalis XB-GENE-983144 I 0.000