BRADI2G34520 (Brachypodium distachyon)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 BRADI2G34520 T245105_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD13
M06956_2.00
Arabidopsis thaliana
YGSCGDNDDHNVCGGHG

CDCCGBNDHHNHCGSCR
Dap-seq
OMalley et al.(2016)
LBD13_col_a
0.798 0.798
LBD13
M06957_2.00
Arabidopsis thaliana
CGSCGNNDDWNNCGG

CCGNNWHHNNCGSCG
Dap-seq
OMalley et al.(2016)
LBD13_colamp_a
0.798 0.798
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI2G34520.1 LOB 59 157

Links

Other LOB family TFs
Other Brachypodium distachyon TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29729.m002335 Ricinus communis 29729.m002335 I 0.838
29957.m001411 Ricinus communis 29957.m001411 I 0.788
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.848
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.848
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.848
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.707
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.960
Bo3g034980 Brassica oleracea Bo3g034980 I 0.848
Bo4g012620 Brassica oleracea Bo4g012620 I 0.838
Bo4g059520 Brassica oleracea Bo4g059520 I 0.798
Bo4g172950 Brassica oleracea Bo4g172950 I 0.808
Bo4g190210 Brassica oleracea Bo4g190210 I 0.838
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.859
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.798
Bra000188 Brassica rapa Bra000188 I 0.848
Bra004572 Brassica rapa Bra004572 I 0.838
Bra016992 Brassica rapa Bra016992 I 0.828
Bra018320 Brassica rapa Bra018320 I 0.798
Bra021627 Brassica rapa Bra021627 I 0.808
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.848
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.798
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.859
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.859
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.788
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.848
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.838
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.768
Ca_04126 Cicer arietinum Ca_04126 I 0.828
Ca_12420 Cicer arietinum Ca_12420 I 0.808
Ca_15642 Cicer arietinum Ca_15642 I 0.808
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.808
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.838
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.788
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.828
Cla006731 Citrullus lanatus Cla006731 I 0.709
Cla007391 Citrullus lanatus Cla007391 I 0.838
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.818
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.818
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.798
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.828
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.848
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.828
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.809
F775_24149 Aegilops tauschii F775_24149 I 0.707
F775_25790 Aegilops tauschii F775_25790 I 0.838
F775_52636 Aegilops tauschii F775_52636 I 0.980
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.828
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.798
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.808
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.828
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.828
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.828
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.848
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.848
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.828
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.808
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.707
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.838
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.909
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.848
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.838
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.828
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.848
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.788
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.788
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.788
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.808
LBD13 Arabidopsis thaliana AT2G30340 D 0.798
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.859
LBD15 Arabidopsis thaliana AT2G40470 I 0.859
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.848
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.707
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.765
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.848
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.949
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.818
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.818
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.818
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.828
MDP0000167580 Malus domestica MDP0000167580 I 0.840
MDP0000278334 Malus domestica MDP0000278334 I 0.808
mgf011471m Mimulus guttatus mgf011471m I 0.808
mgf020556m Mimulus guttatus mgf020556m I 0.828
mgf026046m Mimulus guttatus mgf026046m I 0.717
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.838
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.980
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.818
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.808
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.818
OB01G44400 Oryza brachyantha OB01G44400 I 0.838
OB05G14280 Oryza brachyantha OB05G14280 I 0.977
OBART01G35680 Oryza barthii OBART01G35680 I 0.848
OBART05G04570 Oryza barthii OBART05G04570 I 0.960
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.848
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.707
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.960
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.848
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.838
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.848
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.707
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.960
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.848
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.707
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.960
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.838
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.828
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.788
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.848
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.960
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.848
ORUFI01G46340 Oryza rufipogon ORUFI01G46340 I 0.707
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.707
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.960
OS01G0825000 Oryza sativa OS01G0825000 I 0.848
OS05G0165450 Oryza sativa OS05G0165450 I 0.960
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.909
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.828
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.838
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.717
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.717
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.919
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.747
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.729
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.707
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.788
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.838
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.798
PK11564.1 Cannabis sativa PK11564.1 I 0.707
PK17217.1 Cannabis sativa PK17217.1 I 0.848
PK21617.1 Cannabis sativa PK21617.1 I 0.891
Pm000277 Prunus mume Pm000277 I 0.778
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.828
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.788
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.818
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.838
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.788
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.717
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.818
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.788
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.707
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.838
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.919
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.747
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.747
Si004575m.g Setaria italica Si004575m.g I 0.848
Si012018m.g Setaria italica Si012018m.g I 0.929
Si037583m.g Setaria italica Si037583m.g I 0.717
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.798
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.838
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.788
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.707
TCM_042262 Theobroma cacao TCM_042262 I 0.838
TCM_045438 Theobroma cacao TCM_045438 I 0.848
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.798
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.848
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.828
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.980
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.980
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.980
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.986
TRIUR3_27421 Triticum urartu TRIUR3_27421 I 0.707
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.838