CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BRADI3G55680
(
Brachypodium distachyon
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
BRADI3G55680
T245114_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.737
0.737
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.737
0.737
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.737
0.737
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI3G55680.1
LOB
16
115
PCGACKFLRRRCVAECVFAPYFSSEHGASRFAAIHKVFGASNAAKLLAHLPAAERCEAVVTITFEAQSRLRDPVYGCVAQIFALQQQVAILQAQLMQAKA
Links
Other
LOB
family TFs
Other
Brachypodium distachyon
TFs
231 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Traes_6DL_850266B2A
Triticum aestivum
Traes_6DL_850266B2A
I
0.939
LPERR02G31040
Leersia perrieri
LPERR02G31040
I
0.929
MLOC_61947
Hordeum vulgare
MLOC_61947
I
0.929
Traes_6AL_D6045E37C
Triticum aestivum
Traes_6AL_D6045E37C
I
0.929
TRIUR3_01477
Triticum urartu
TRIUR3_01477
I
0.929
Si019578m.g
Setaria italica
Si019578m.g
I
0.919
GRMZM2G075499
Zea mays
GRMZM2G075499
I
0.909
Sb04g037550
Sorghum bicolor
Sb04g037550
I
0.909
OB02G44330
Oryza brachyantha
OB02G44330
I
0.899
OPUNC02G34750
Oryza punctata
OPUNC02G34750
I
0.899
Pavir.Aa00097
Panicum virgatum
Pavir.Aa00097
I
0.899
Pavir.J39638
Panicum virgatum
Pavir.J39638
I
0.899
ORGLA02G0327800
Oryza glaberrima
ORGLA02G0327800
I
0.889
ORUFI02G39110
Oryza rufipogon
ORUFI02G39110
I
0.889
BGIOSGA005344
Oryza indica
BGIOSGA005344
I
0.889
OS02G0820500
Oryza sativa
OS02G0820500
I
0.889
ONIVA02G40360
Oryza nivara
ONIVA02G40360
I
0.889
OGLUM02G38740
Oryza glumaepatula
OGLUM02G38740
I
0.889
OMERI02G35350
Oryza meridionalis
OMERI02G35350
I
0.889
LBD16
Vitis vinifera
VIT_07s0005g03030
I
0.798
POPTR_0005s24320
Populus trichocarpa
POPTR_0005s24320
I
0.788
GLYMA03G31830
Glycine max
GLYMA03G31830
I
0.788
SapurV1A.0378s0180
Salix purpurea
SapurV1A.0378s0180
I
0.788
Cla006088
Citrullus lanatus
Cla006088
I
0.788
GLYMA19G34590
Glycine max
GLYMA19G34590
I
0.778
TCM_004106
Theobroma cacao
TCM_004106
I
0.778
cassava15612.m1
Manihot esculenta
cassava15612.m1
I
0.778
Ciclev10024416m.g
Citrus clementina
Ciclev10024416m.g
I
0.778
Gorai.004G073400
Gossypium raimondii
Gorai.004G073400
I
0.778
Gorai.007G144400
Gossypium raimondii
Gorai.007G144400
I
0.778
Lus10024877.g
Linum usitatissimum
Lus10024877.g
I
0.778
Lus10000707.g
Linum usitatissimum
Lus10000707.g
I
0.778
orange1.1g040761m.g
Citrus sinensis
orange1.1g040761m.g
I
0.778
Cucsa.053440
Cucumis sativus
Cucsa.053440
I
0.778
Aquca_034_00401
Aquilegia coerulea
Aquca_034_00401
I
0.768
Gorai.001G251600
Gossypium raimondii
Gorai.001G251600
I
0.768
Lus10014757.g
Linum usitatissimum
Lus10014757.g
I
0.768
Lus10033872.g
Linum usitatissimum
Lus10033872.g
I
0.768
MDP0000145761
Malus domestica
MDP0000145761
I
0.768
gene08250-v1.0-hybrid
Fragaria vesca
gene08250-v1.0-hybrid
I
0.768
evm.TU.supercontig_50.43
Carica papaya
evm.TU.supercontig_50.43
I
0.768
Pm020629
Prunus mume
Pm020629
I
0.768
29883.m002035
Ricinus communis
29883.m002035
I
0.768
MTR_7g096530
Medicago truncatula
MTR_7g096530
I
0.768
Eucgr.K03284
Eucalyptus grandis
Eucgr.K03284
I
0.768
Ca_12213
Cicer arietinum
Ca_12213
I
0.768
PDK_20s1428661g002
Phoenix dactylifera
PDK_20s1428661g002
I
0.768
BRADI4G14890
Brachypodium distachyon
BRADI4G14890
N
0.766
OBART03G03830
Oryza barthii
OBART03G03830
I
0.758
GRMZM2G092542
Zea mays
GRMZM2G092542
I
0.758
OPUNC03G03520
Oryza punctata
OPUNC03G03520
I
0.758
OB03G13890
Oryza brachyantha
OB03G13890
I
0.758
POPTR_0002s04210
Populus trichocarpa
POPTR_0002s04210
I
0.758
BGIOSGA011445
Oryza indica
BGIOSGA011445
I
0.758
PRUPE_ppa025349mg
Prunus persica
PRUPE_ppa025349mg
I
0.758
GSMUA_Achr1G01350_001
Musa acuminata
GSMUA_Achr1G01350_001
I
0.758
Sb01g046990
Sorghum bicolor
Sb01g046990
I
0.758
Si040019m.g
Setaria italica
Si040019m.g
I
0.758
Traes_4AL_3BA1D51E2
Triticum aestivum
Traes_4AL_3BA1D51E2
N
0.758
OMERI07G01660
Oryza meridionalis
OMERI07G01660
I
0.758
Sb01g047000
Sorghum bicolor
Sb01g047000
I
0.758
MLOC_10783
Hordeum vulgare
MLOC_10783
N
0.758
Pavir.J03376
Panicum virgatum
Pavir.J03376
I
0.758
ORUFI03G03550
Oryza rufipogon
ORUFI03G03550
I
0.758
SapurV1A.0006s0980
Salix purpurea
SapurV1A.0006s0980
I
0.758
LPERR03G03470
Leersia perrieri
LPERR03G03470
I
0.758
Pavir.Ib00283
Panicum virgatum
Pavir.Ib00283
I
0.758
ONIVA03G03580
Oryza nivara
ONIVA03G03580
I
0.758
PGSC0003DMG400009713
Solanum tuberosum
PGSC0003DMG400009713
I
0.758
MDP0000131964
Malus domestica
MDP0000131964
I
0.758
OS03G0149100
Oryza sativa
OS03G0149100
I
0.758
Pavir.Ia04220
Panicum virgatum
Pavir.Ia04220
I
0.758
ORGLA03G0035900
Oryza glaberrima
ORGLA03G0035900
I
0.758
GSMUA_Achr1G01360_001
Musa acuminata
GSMUA_Achr1G01360_001
I
0.747
GRMZM2G092483
Zea mays
GRMZM2G092483
I
0.747
Bo4g191530
Brassica oleracea
Bo4g191530
I
0.747
Pavir.Ib00282
Panicum virgatum
Pavir.Ib00282
I
0.747
Bo4g016000
Brassica oleracea
Bo4g016000
I
0.747
Thhalv10017158m.g
Eutrema salsugineum
Thhalv10017158m.g
I
0.747
Bra004693
Brassica rapa
Bra004693
I
0.747
Carubv10025548m.g
Capsella rubella
Carubv10025548m.g
I
0.747
Traes_4AL_CAF4E16B5
Triticum aestivum
Traes_4AL_CAF4E16B5
I
0.747
Bostr.25993s0538
Boechera stricta
Bostr.25993s0538
I
0.747
Cagra.2636s0029
Capsella grandiflora
Cagra.2636s0029
I
0.747
Si037727m.g
Setaria italica
Si037727m.g
I
0.747
Traes_4DL_05F87867C
Triticum aestivum
Traes_4DL_05F87867C
N
0.747
OBART02G37570
Oryza barthii
OBART02G37570
I
0.747
GSMUA_Achr5G13230_001
Musa acuminata
GSMUA_Achr5G13230_001
I
0.747
F775_21330
Aegilops tauschii
F775_21330
N
0.742
OLONG_009479
Oryza longistaminata
OLONG_009479
N
0.741
gw1.190.59.1
Physcomitrella patens
gw1.190.59.1
I
0.739
Traes_4BS_B43A99154
Triticum aestivum
Traes_4BS_B43A99154
N
0.737
Traes_4DL_43D63ABE3
Triticum aestivum
Traes_4DL_43D63ABE3
I
0.737
Traes_4BL_F71DE14F7
Triticum aestivum
Traes_4BL_F71DE14F7
N
0.737
LBD16
Arabidopsis lyrata
scaffold_403099.1
I
0.737
Gorai.001G251700
Gossypium raimondii
Gorai.001G251700
I
0.737
GLYMA10G04040
Glycine max
GLYMA10G04040
I
0.737
Traes_4DS_11C3B0459
Triticum aestivum
Traes_4DS_11C3B0459
I
0.737
Traes_4BS_5D9291539
Triticum aestivum
Traes_4BS_5D9291539
I
0.737
TRIUR3_07751
Triticum urartu
TRIUR3_07751
I
0.737
BRADI1G75120
Brachypodium distachyon
BRADI1G75120
N
0.737
cassava40664.m1
Manihot esculenta
cassava40664.m1
I
0.737
Gorai.004G220000
Gossypium raimondii
Gorai.004G220000
I
0.737
OB03G13880
Oryza brachyantha
OB03G13880
I
0.737
BRADI1G75110
Brachypodium distachyon
BRADI1G75110
I
0.737
Bra016877
Brassica rapa
Bra016877
I
0.737
MLOC_10784
Hordeum vulgare
MLOC_10784
I
0.737
Bra000257
Brassica rapa
Bra000257
I
0.737
GSMUA_AchrUn_randomG23710_001
Musa acuminata
GSMUA_AchrUn_randomG23710_001
I
0.737
LBD16
Arabidopsis thaliana
AT2G42430
D
0.737
Traes_4BL_A4D0F4AD6
Triticum aestivum
Traes_4BL_A4D0F4AD6
I
0.737
F775_22967
Aegilops tauschii
F775_22967
I
0.737
Pavir.J24246
Panicum virgatum
Pavir.J24246
I
0.737
gene08253-v1.0-hybrid
Fragaria vesca
gene08253-v1.0-hybrid
I
0.737
Bo3g036030
Brassica oleracea
Bo3g036030
I
0.737
LPERR03G03460
Leersia perrieri
LPERR03G03460
I
0.737
gw1.42.84.1
Physcomitrella patens
gw1.42.84.1
I
0.736
ORUFI08G26340
Oryza rufipogon
ORUFI08G26340
I
0.727
OBART08G23860
Oryza barthii
OBART08G23860
I
0.727
OS08G0563400
Oryza sativa
OS08G0563400
I
0.727
BRADI3G12550
Brachypodium distachyon
BRADI3G12550
I
0.727
OS03G0149000
Oryza sativa
OS03G0149000
I
0.727
OPUNC08G21770
Oryza punctata
OPUNC08G21770
I
0.727
Lus10033873.g
Linum usitatissimum
Lus10033873.g
I
0.727
ORGLA08G0192400
Oryza glaberrima
ORGLA08G0192400
I
0.727
Cucsa.053450
Cucumis sativus
Cucsa.053450
I
0.727
GLYMA13G18210
Glycine max
GLYMA13G18210
I
0.727
Lus10000613.g
Linum usitatissimum
Lus10000613.g
I
0.727
ORGLA03G0035800
Oryza glaberrima
ORGLA03G0035800
I
0.727
OPUNC03G03510
Oryza punctata
OPUNC03G03510
I
0.727
28428.m000040
Ricinus communis
28428.m000040
I
0.727
ONIVA09G01330
Oryza nivara
ONIVA09G01330
I
0.727
LPERR08G20530
Leersia perrieri
LPERR08G20530
I
0.727
BGIOSGA011866
Oryza indica
BGIOSGA011866
I
0.727
Cla006087
Citrullus lanatus
Cla006087
I
0.727
OMERI08G18670
Oryza meridionalis
OMERI08G18670
I
0.727
AC149818.2_FG009
Zea mays
AC149818.2_FG009
I
0.727
OGLUM08G25340
Oryza glumaepatula
OGLUM08G25340
I
0.727
OB08G30680
Oryza brachyantha
OB08G30680
I
0.727
Sb07g023810
Sorghum bicolor
Sb07g023810
I
0.727
BGIOSGA026473
Oryza indica
BGIOSGA026473
I
0.727
Solyc06g083930.1
Solanum lycopersicum
Solyc06g083930.1
I
0.727
GSMUA_Achr10G06700_001
Musa acuminata
GSMUA_Achr10G06700_001
I
0.727
OLONG_010223
Oryza longistaminata
OLONG_010223
I
0.727
MLOC_52276
Hordeum vulgare
MLOC_52276
I
0.727
mgf020773m
Mimulus guttatus
mgf020773m
I
0.727
evm.TU.supercontig_50.42
Carica papaya
evm.TU.supercontig_50.42
I
0.727
GSMUA_AchrUn_randomG07730_001
Musa acuminata
GSMUA_AchrUn_randomG07730_001
I
0.727
GLYMA10G04050
Glycine max
GLYMA10G04050
I
0.727
mgf026090m
Mimulus guttatus
mgf026090m
I
0.726
OLONG_001985
Oryza longistaminata
OLONG_001985
I
0.722
OLONG_020841
Oryza longistaminata
OLONG_020841
I
0.719
OGLUM03G03710
Oryza glumaepatula
OGLUM03G03710
I
0.719
Cagra.0686s0036
Capsella grandiflora
Cagra.0686s0036
I
0.717
MTR_7g096610
Medicago truncatula
MTR_7g096610
I
0.717
Gorai.007G144500
Gossypium raimondii
Gorai.007G144500
I
0.717
Bostr.20903s0070
Boechera stricta
Bostr.20903s0070
I
0.717
Aquca_017_00683
Aquilegia coerulea
Aquca_017_00683
I
0.717
Thhalv10006423m.g
Eutrema salsugineum
Thhalv10006423m.g
I
0.717
GLYMA13G18191
Glycine max
GLYMA13G18191
I
0.717
Gorai.004G161100
Gossypium raimondii
Gorai.004G161100
I
0.717
GSMUA_AchrUn_randomG10470_001
Musa acuminata
GSMUA_AchrUn_randomG10470_001
I
0.717
VIT_07s0005g03020
Vitis vinifera
VIT_07s0005g03020
I
0.717
Eucgr.B01529
Eucalyptus grandis
Eucgr.B01529
I
0.717
POPTR_0002s04200
Populus trichocarpa
POPTR_0002s04200
I
0.717
Carubv10019250m.g
Capsella rubella
Carubv10019250m.g
I
0.717
Gorai.004G073200
Gossypium raimondii
Gorai.004G073200
I
0.717
Solyc09g066260.2
Solanum lycopersicum
Solyc09g066260.2
I
0.717
Si015156m.g
Setaria italica
Si015156m.g
I
0.717
Solyc01g091420.1
Solanum lycopersicum
Solyc01g091420.1
I
0.717
GSMUA_Achr8G14330_001
Musa acuminata
GSMUA_Achr8G14330_001
I
0.717
cassava41632.m1
Manihot esculenta
cassava41632.m1
I
0.717
GSMUA_Achr2G11240_001
Musa acuminata
GSMUA_Achr2G11240_001
I
0.717
GSMUA_Achr5G11330_001
Musa acuminata
GSMUA_Achr5G11330_001
I
0.717
Gorai.004G073300
Gossypium raimondii
Gorai.004G073300
I
0.717
orange1.1g027399m.g
Citrus sinensis
orange1.1g027399m.g
I
0.717
Ciclev10023341m.g
Citrus clementina
Ciclev10023341m.g
I
0.717
AMTR_s00041p00044170
Amborella trichopoda
AMTR_s00041p00044170
I
0.717
LBD29
Arabidopsis lyrata
fgenesh2_kg.5__2263__AT3G58190.1
I
0.717
PK23380.1
Cannabis sativa
PK23380.1
I
0.716
PGSC0003DMG402012772
Solanum tuberosum
PGSC0003DMG402012772
I
0.713
Bo8g092560
Brassica oleracea
Bo8g092560
I
0.707
Pavir.J34872
Panicum virgatum
Pavir.J34872
I
0.707
SapurV1A.0006s0970
Salix purpurea
SapurV1A.0006s0970
I
0.707
LPERR03G09330
Leersia perrieri
LPERR03G09330
I
0.707
Thhalv10006226m.g
Eutrema salsugineum
Thhalv10006226m.g
I
0.707
MLOC_55239
Hordeum vulgare
MLOC_55239
I
0.707
BGIOSGA011118
Oryza indica
BGIOSGA011118
I
0.707
MTR_1g070220
Medicago truncatula
MTR_1g070220
I
0.707
orange1.1g036534m.g
Citrus sinensis
orange1.1g036534m.g
I
0.707
MTR_1g070205
Medicago truncatula
MTR_1g070205
I
0.707
Pavir.Fa00011
Panicum virgatum
Pavir.Fa00011
I
0.707
Gorai.008G114400
Gossypium raimondii
Gorai.008G114400
I
0.707
GLYMA19G34600
Glycine max
GLYMA19G34600
I
0.707
OGLUM03G10340
Oryza glumaepatula
OGLUM03G10340
I
0.707
Sb01g041130
Sorghum bicolor
Sb01g041130
I
0.707
PRUPE_ppa025889mg
Prunus persica
PRUPE_ppa025889mg
I
0.707
TCM_005496
Theobroma cacao
TCM_005496
I
0.707
Traes_4AL_BB3F89030
Triticum aestivum
Traes_4AL_BB3F89030
N
0.707
Traes_4DL_A2012EA68
Triticum aestivum
Traes_4DL_A2012EA68
I
0.707
Traes_4AS_5971FF832
Triticum aestivum
Traes_4AS_5971FF832
I
0.707
PRUPE_ppa010383mg
Prunus persica
PRUPE_ppa010383mg
I
0.707
OMERI03G09680
Oryza meridionalis
OMERI03G09680
I
0.707
ORGLA03G0100400
Oryza glaberrima
ORGLA03G0100400
I
0.707
GSMUA_Achr4G25190_001
Musa acuminata
GSMUA_Achr4G25190_001
I
0.707
OPUNC03G10080
Oryza punctata
OPUNC03G10080
I
0.707
ORUFI03G10670
Oryza rufipogon
ORUFI03G10670
I
0.707
GSMUA_Achr1G02520_001
Musa acuminata
GSMUA_Achr1G02520_001
I
0.707
PGSC0003DMG400020069
Solanum tuberosum
PGSC0003DMG400020069
I
0.707
OS03G0246900
Oryza sativa
OS03G0246900
I
0.707
LBD29
Arabidopsis thaliana
AT3G58190
I
0.707
GRMZM2G110913
Zea mays
GRMZM2G110913
I
0.707
gw1.61.81.1
Physcomitrella patens
gw1.61.81.1
I
0.707
gw1.35.169.1
Physcomitrella patens
gw1.35.169.1
I
0.707
gw1.157.74.1
Physcomitrella patens
gw1.157.74.1
I
0.707
Cagra.0686s0035
Capsella grandiflora
Cagra.0686s0035
I
0.707
Carubv10018619m.g
Capsella rubella
Carubv10018619m.g
I
0.707
Eucgr.E01414
Eucalyptus grandis
Eucgr.E01414
I
0.707
Ciclev10021992m.g
Citrus clementina
Ciclev10021992m.g
I
0.707
Cucsa.362840
Cucumis sativus
Cucsa.362840
I
0.707
cassava36912.valid.m1
Manihot esculenta
cassava36912.valid.m1
I
0.707
Ca_12214
Cicer arietinum
Ca_12214
I
0.707
OBART03G10450
Oryza barthii
OBART03G10450
I
0.707
Ca_07763
Cicer arietinum
Ca_07763
I
0.707
Cla007068
Citrullus lanatus
Cla007068
I
0.707
Cla015094
Citrullus lanatus
Cla015094
I
0.707
30174.m008898
Ricinus communis
30174.m008898
I
0.707
Pm017936
Prunus mume
Pm017936
I
0.707
GLYMA03G31860
Glycine max
GLYMA03G31860
I
0.707
SELMODRAFT_59642
Selaginella moellendorffii
SELMODRAFT_59642
I
0.701
SELMODRAFT_49270
Selaginella moellendorffii
SELMODRAFT_49270
I
0.701