GLYMA04G39830 (Glycine max)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 GLYMA04G39830 T245190_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.838 0.838
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.838 0.838
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA04G39830.1 LOB 42 140
GLYMA04G39830.2 LOB 49 147

Links

Other LOB family TFs
Other Glycine max TFs

193 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA06G15050 Glycine max GLYMA06G15050 I 1.000
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.990
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.980
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.980
TCM_045438 Theobroma cacao TCM_045438 I 0.980
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.980
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.980
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.980
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.980
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.970
Ca_04126 Cicer arietinum Ca_04126 I 0.970
MDP0000278334 Malus domestica MDP0000278334 I 0.970
PK17217.1 Cannabis sativa PK17217.1 I 0.970
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.970
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.960
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.960
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.960
29729.m002335 Ricinus communis 29729.m002335 I 0.960
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.960
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.949
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.949
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.949
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.949
LBD15 Arabidopsis thaliana AT2G40470 I 0.949
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.949
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.949
Bo4g190210 Brassica oleracea Bo4g190210 I 0.939
Bo4g012620 Brassica oleracea Bo4g012620 I 0.939
Bo3g034980 Brassica oleracea Bo3g034980 I 0.939
Bra004572 Brassica rapa Bra004572 I 0.939
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.939
Bra000188 Brassica rapa Bra000188 I 0.939
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.929
Cla007391 Citrullus lanatus Cla007391 I 0.929
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.929
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.929
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.929
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.929
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.929
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.929
Bra016992 Brassica rapa Bra016992 I 0.919
Ca_12420 Cicer arietinum Ca_12420 I 0.919
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.919
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.919
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.919
TCM_042262 Theobroma cacao TCM_042262 I 0.909
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.909
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.899
mgf011471m Mimulus guttatus mgf011471m I 0.899
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.899
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.899
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.899
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.899
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.899
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.889
29957.m001411 Ricinus communis 29957.m001411 I 0.889
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.889
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.889
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.889
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.889
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.889
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.879
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.879
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.879
mgf020556m Mimulus guttatus mgf020556m I 0.879
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.879
Ca_15642 Cicer arietinum Ca_15642 I 0.879
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.879
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.879
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.869
Pm000277 Prunus mume Pm000277 I 0.869
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.869
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.869
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.869
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.869
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.869
OBART05G04570 Oryza barthii OBART05G04570 I 0.869
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.869
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.869
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.869
OS05G0165450 Oryza sativa OS05G0165450 I 0.869
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.869
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.869
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.859
Si012018m.g Setaria italica Si012018m.g I 0.859
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.859
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.859
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.859
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.848
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.848
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.848
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.848
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.848
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.848
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.848
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.848
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.848
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.848
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.848
OS01G0825000 Oryza sativa OS01G0825000 I 0.848
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.848
F775_52636 Aegilops tauschii F775_52636 I 0.848
OBART01G35680 Oryza barthii OBART01G35680 I 0.848
OB01G44400 Oryza brachyantha OB01G44400 I 0.848
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.848
F775_25790 Aegilops tauschii F775_25790 I 0.848
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.848
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.848
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.848
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.848
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.848
Bra021627 Brassica rapa Bra021627 I 0.848
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.848
Si004575m.g Setaria italica Si004575m.g I 0.848
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.848
Bo4g172950 Brassica oleracea Bo4g172950 I 0.848
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.848
Bo4g190140 Brassica oleracea Bo4g190140 I 0.842
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.838
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.838
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.838
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.838
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.838
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.838
Bo4g059520 Brassica oleracea Bo4g059520 I 0.838
LBD13 Arabidopsis thaliana AT2G30340 D 0.838
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.838
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.838
Bra018320 Brassica rapa Bra018320 I 0.838
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.838
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.828
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.828
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.828
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.808
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.798
OB05G14280 Oryza brachyantha OB05G14280 I 0.788
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.780
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.758
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N 0.746
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.737
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.737
30169.m006340 Ricinus communis 30169.m006340 I 0.727
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.727
Si026864m.g Setaria italica Si026864m.g I 0.727
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.727
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.727
TCM_032557 Theobroma cacao TCM_032557 I 0.727
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.717
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.717
MDP0000268890 Malus domestica MDP0000268890 I 0.717
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.717
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.717
MDP0000284409 Malus domestica MDP0000284409 I 0.717
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.717
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.717
Pm011040 Prunus mume Pm011040 I 0.717
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.717
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.717
mgf026046m Mimulus guttatus mgf026046m I 0.717
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.717
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.717
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.707
Si037583m.g Setaria italica Si037583m.g I 0.707
Cla013678 Citrullus lanatus Cla013678 I 0.707
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.707
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.707
Ca_13575 Cicer arietinum Ca_13575 I 0.707
Ca_12450 Cicer arietinum Ca_12450 I 0.707
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.707
LBD4 Arabidopsis thaliana AT1G31320 D 0.707
SELMODRAFT_49084 Selaginella moellendorffii SELMODRAFT_49084 I 0.707
PK11564.1 Cannabis sativa PK11564.1 I 0.707
Bo3g024350 Brassica oleracea Bo3g024350 I 0.707
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.707
chr6.CM0738.260.nd Lotus japonicus chr6.CM0738.260.nd I 0.707
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.707
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.707
MDP0000121203 Malus domestica MDP0000121203 I 0.707
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.707
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.707
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.707
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.707
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.707
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.707
Bra022780 Brassica rapa Bra022780 I 0.707
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.707
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.707
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.707
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.707
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.707
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.707
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.707