GLYMA09G40500 (Glycine max)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 GLYMA09G40500 T245211_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.848 0.848
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.848 0.848
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG

CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.778 0.778
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD

HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.778 0.778
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG

CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.707 0.707
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR

YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.707 0.707
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN

NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.707 0.707
LBD19
M06960_2.00
Arabidopsis thaliana
CCKKAAAWHMMGSND

HNSCKKDWTTTMMGG
Dap-seq
OMalley et al.(2016)
LBD19_col_a
0.707 0.707
LBD19
M06961_2.00
Arabidopsis thaliana
WWYCCGG

CCGGRWW
Dap-seq
OMalley et al.(2016)
LBD19_colamp_a
0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA09G40500.1 LOB 15 114

Links

Other LOB family TFs
Other Glycine max TFs

254 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29883.m002035 Ricinus communis 29883.m002035 I 0.727
30072.m000955 Ricinus communis 30072.m000955 I 0.758
30174.m008897 Ricinus communis 30174.m008897 I 0.778
30174.m008898 Ricinus communis 30174.m008898 I 0.869
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.798
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.768
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.848
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.798
Aquca_017_00683 Aquilegia coerulea Aquca_017_00683 I 0.707
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.737
LBD16 Arabidopsis thaliana AT2G42430 D 0.707
LBD19 Arabidopsis thaliana AT2G45410 D 0.707
LBD18 Arabidopsis thaliana AT2G45420 D 0.848
LBD20 Arabidopsis thaliana AT3G03760 I 0.758
LBD29 Arabidopsis thaliana AT3G58190 I 0.717
LBD31 Arabidopsis thaliana AT4G00210 I 0.717
LBD30 Arabidopsis thaliana AT4G00220 D 0.778
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.828
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.798
Bo1g153580 Brassica oleracea Bo1g153580 I 0.758
Bo2g097560 Brassica oleracea Bo2g097560 I 0.788
Bo3g036000 Brassica oleracea Bo3g036000 I 0.731
Bo3g036030 Brassica oleracea Bo3g036030 I 0.707
Bo4g016000 Brassica oleracea Bo4g016000 I 0.717
Bo4g024620 Brassica oleracea Bo4g024620 I 0.848
Bo4g191530 Brassica oleracea Bo4g191530 I 0.717
Bo4g195510 Brassica oleracea Bo4g195510 I 0.708
Bo4g195520 Brassica oleracea Bo4g195520 I 0.828
Bo8g092560 Brassica oleracea Bo8g092560 I 0.707
Bo9g002150 Brassica oleracea Bo9g002150 I 0.717
Bo9g002160 Brassica oleracea Bo9g002160 I 0.768
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.747
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.778
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.758
Bostr.20903s0070 Boechera stricta Bostr.20903s0070 I 0.707
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.848
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.717
Bra000257 Brassica rapa Bra000257 I 0.707
Bra004693 Brassica rapa Bra004693 I 0.717
Bra004910 Brassica rapa Bra004910 I 0.848
Bra008514 Brassica rapa Bra008514 I 0.788
Bra016877 Brassica rapa Bra016877 I 0.717
Bra036436 Brassica rapa Bra036436 I 0.758
Bra037322 Brassica rapa Bra037322 I 0.717
Bra037323 Brassica rapa Bra037323 I 0.768
Bra040311 Brassica rapa Bra040311 I 0.838
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.838
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.778
Cagra.0686s0036 Capsella grandiflora Cagra.0686s0036 I 0.707
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.848
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.758
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.778
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.758
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.717
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.778
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.747
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.758
Carubv10019250m.g Capsella rubella Carubv10019250m.g I 0.707
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.848
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.717
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.758
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.737
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.747
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.889
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.768
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.869
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.758
Ca_07763 Cicer arietinum Ca_07763 I 0.707
Ca_12213 Cicer arietinum Ca_12213 I 0.758
Ca_19598 Cicer arietinum Ca_19598 I 0.778
Ca_20428 Cicer arietinum Ca_20428 I 0.768
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.788
chr1.LjT38H23.30.nd Lotus japonicus chr1.LjT38H23.30.nd I 0.737
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.717
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.758
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.869
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.727
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.737
Cla002965 Citrullus lanatus Cla002965 I 0.737
Cla006087 Citrullus lanatus Cla006087 I 0.707
Cla006088 Citrullus lanatus Cla006088 I 0.727
Cla007068 Citrullus lanatus Cla007068 I 0.869
Cla007069 Citrullus lanatus Cla007069 I 0.747
Cla021625 Citrullus lanatus Cla021625 I 0.788
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.727
Cucsa.053450 Cucumis sativus Cucsa.053450 I 0.707
Cucsa.257700 Cucumis sativus Cucsa.257700 I 0.788
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.727
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.869
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.879
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.747
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.758
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.768
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.758
evm.TU.supercontig_50.42 Carica papaya evm.TU.supercontig_50.42 I 0.707
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.758
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.758
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.848
LBD29 Arabidopsis lyrata fgenesh2_kg.5__2263__AT3G58190.1 I 0.707
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.778
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.747
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.788
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.788
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.717
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.768
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.859
GLYMA02G27230 Glycine max GLYMA02G27230 I 0.707
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.879
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.778
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.747
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.727
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.717
GLYMA10G11031 Glycine max GLYMA10G11031 I 0.717
GLYMA13G18191 Glycine max GLYMA13G18191 I 0.707
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.717
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.960
GLYMA19G30200 Glycine max GLYMA19G30200 I 0.737
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.758
GLYMA19G34600 Glycine max GLYMA19G34600 I 0.707
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.747
Gorai.001G251700 Gossypium raimondii Gorai.001G251700 I 0.707
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.727
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.859
Gorai.004G219900 Gossypium raimondii Gorai.004G219900 I 0.727
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.747
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.727
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.737
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.747
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.859
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.818
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.838
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.838
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.838
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.818
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.848
GSMUA_Achr9G10530_001 Musa acuminata GSMUA_Achr9G10530_001 I 0.727
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.828
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.747
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.737
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.747
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.782
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.747
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.848
LjT35F15.70.nd Lotus japonicus LjT35F15.70.nd I 0.717
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.828
Lus10000613.g Linum usitatissimum Lus10000613.g I 0.707
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.768
Lus10014757.g Linum usitatissimum Lus10014757.g I 0.707
Lus10033873.g Linum usitatissimum Lus10033873.g I 0.707
MDP0000131964 Malus domestica MDP0000131964 I 0.747
MDP0000145761 Malus domestica MDP0000145761 I 0.727
MDP0000254224 Malus domestica MDP0000254224 I 0.778
MDP0000322059 Malus domestica MDP0000322059 I 0.747
MDP0000429067 Malus domestica MDP0000429067 I 0.798
mgf006429m Mimulus guttatus mgf006429m I 0.747
mgf020735m Mimulus guttatus mgf020735m I 0.788
mgf020773m Mimulus guttatus mgf020773m I 0.707
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.828
MTR_1g070205 Medicago truncatula MTR_1g070205 I 0.727
MTR_1g070220 Medicago truncatula MTR_1g070220 I 0.717
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.798
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.737
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.768
MTR_7g096610 Medicago truncatula MTR_7g096610 I 0.707
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.859
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.788
OB03G20590 Oryza brachyantha OB03G20590 I 0.737
OB10G12360 Oryza brachyantha OB10G12360 I 0.798
OBART03G10450 Oryza barthii OBART03G10450 I 0.828
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.828
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.798
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.747
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.707
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.828
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.798
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.828
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.798
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.869
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.737
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.725
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.758
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.828
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.798
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.828
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.798
OS03G0246900 Oryza sativa OS03G0246900 I 0.828
OS10G0162600 Oryza sativa OS10G0162600 I 0.798
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.818
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.778
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.818
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.838
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.717
PGSC0003DMG400009713 Solanum tuberosum PGSC0003DMG400009713 I 0.707
PGSC0003DMG400009716 Solanum tuberosum PGSC0003DMG400009716 I 0.717
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.747
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.809
PK23185.1 Cannabis sativa PK23185.1 I 0.747
PK25573.1 Cannabis sativa PK25573.1 I 0.778
Pm017935 Prunus mume Pm017935 I 0.808
Pm017936 Prunus mume Pm017936 I 0.869
Pm020627 Prunus mume Pm020627 I 0.717
Pm020628 Prunus mume Pm020628 I 0.707
Pm020629 Prunus mume Pm020629 I 0.747
Pm028642 Prunus mume Pm028642 I 0.758
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.707
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.737
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.745
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.747
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.737
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.747
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.747
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.768
POPTR_0047s00280 Populus trichocarpa POPTR_0047s00280 I 0.705
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.869
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.818
PRUPE_ppa019939mg Prunus persica PRUPE_ppa019939mg I 0.717
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.758
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.747
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.737
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.818
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.758
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.727
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.859
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.737
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.758
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.838
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.707
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.724
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.724
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.717
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.828
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.737
Solyc06g083930.1 Solanum lycopersicum Solyc06g083930.1 I 0.707
Solyc09g066260.2 Solanum lycopersicum Solyc09g066260.2 I 0.707
Solyc09g066270.2 Solanum lycopersicum Solyc09g066270.2 I 0.707
TCM_004106 Theobroma cacao TCM_004106 I 0.747
TCM_005496 Theobroma cacao TCM_005496 I 0.826
TCM_005497 Theobroma cacao TCM_005497 I 0.798
TCM_025849 Theobroma cacao TCM_025849 I 0.758
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.848
Thhalv10006226m.g Eutrema salsugineum Thhalv10006226m.g I 0.707
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.717
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.758
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.717
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.758
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.828
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.818
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.828
TRIUR3_25587 Triticum urartu TRIUR3_25587 I 0.707
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.707
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.737
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.758
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.838
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.737