GLYMA12G07650 (Glycine max)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 GLYMA12G07650 T245223_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA12G07650.1 LOB 35 133

Links

Other LOB family TFs
Other Glycine max TFs

258 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.contig_40341.1 Carica papaya evm.TU.contig_40341.1 I 0.974
30111.m000703 Ricinus communis 30111.m000703 I 0.970
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.970
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.970
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.970
TCM_041094 Theobroma cacao TCM_041094 I 0.970
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.970
Ca_14605 Cicer arietinum Ca_14605 I 0.960
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.960
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I 0.960
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.960
Pm000938 Prunus mume Pm000938 I 0.949
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.949
GLYMA13G40370 Glycine max GLYMA13G40370 I 0.949
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.949
PK27389.1 Cannabis sativa PK27389.1 I 0.949
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.949
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.939
Cla000556 Citrullus lanatus Cla000556 I 0.939
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.939
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I 0.939
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.939
MDP0000319331 Malus domestica MDP0000319331 I 0.939
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I 0.939
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I 0.939
orange1.1g047530m.g Citrus sinensis orange1.1g047530m.g I 0.936
CM1887.100.nc Lotus japonicus CM1887.100.nc I 0.929
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I 0.929
GLYMA20G31780 Glycine max GLYMA20G31780 I 0.929
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I 0.929
MDP0000218986 Malus domestica MDP0000218986 I 0.929
MDP0000318244 Malus domestica MDP0000318244 I 0.929
MTR_2g093310 Medicago truncatula MTR_2g093310 I 0.929
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.919
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.919
TCM_043081 Theobroma cacao TCM_043081 I 0.919
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.919
LjSGA_079940.1 Lotus japonicus LjSGA_079940.1 N 0.917
Ca_04287 Cicer arietinum Ca_04287 I 0.909
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.909
PK23777.1 Cannabis sativa PK23777.1 I 0.909
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.909
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.909
Pm018585 Prunus mume Pm018585 I 0.909
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.909
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.909
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.909
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.909
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.909
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.909
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.899
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N 0.899
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.899
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.899
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.899
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I 0.899
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N 0.899
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.899
Cla020379 Citrullus lanatus Cla020379 I 0.899
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.899
Cla005134 Citrullus lanatus Cla005134 N 0.899
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.897
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N 0.889
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.889
MDP0000151784 Malus domestica MDP0000151784 I 0.889
Ca_02507 Cicer arietinum Ca_02507 N 0.889
MDP0000123013 Malus domestica MDP0000123013 I 0.889
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.889
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.889
MDP0000822986 Malus domestica MDP0000822986 I 0.889
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N 0.879
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.879
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.879
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I 0.879
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.879
Bo01039s010 Brassica oleracea Bo01039s010 N 0.879
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N 0.879
MDP0000879799 Malus domestica MDP0000879799 N 0.879
Bra035698 Brassica rapa Bra035698 N 0.869
Bo5g008590 Brassica oleracea Bo5g008590 N 0.869
LBD11 Arabidopsis thaliana AT2G28500 N 0.869
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.869
Carubv10023989m.g Capsella rubella Carubv10023989m.g N 0.869
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.869
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.869
mgf022524m Mimulus guttatus mgf022524m N 0.869
Bra011942 Brassica rapa Bra011942 N 0.869
Bra018675 Brassica rapa Bra018675 N 0.869
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N 0.869
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.869
Bo4g165420 Brassica oleracea Bo4g165420 N 0.869
Gorai.012G185900 Gossypium raimondii Gorai.012G185900 N 0.868
Eucgr.E02410 Eucalyptus grandis Eucgr.E02410 N 0.863
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.859
Cucsa.207400 Cucumis sativus Cucsa.207400 N 0.859
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.859
Bra000491 Brassica rapa Bra000491 N 0.859
Bo3g040220 Brassica oleracea Bo3g040220 N 0.859
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.859
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.859
OB05G11740 Oryza brachyantha OB05G11740 I 0.859
mgf015666m Mimulus guttatus mgf015666m N 0.859
Solyc06g075330.1 Solanum lycopersicum Solyc06g075330.1 N 0.852
PDK_20s1376911g004 Phoenix dactylifera PDK_20s1376911g004 I 0.852
cassava16668.m1 Manihot esculenta cassava16668.m1 N 0.851
Cla005133 Citrullus lanatus Cla005133 N 0.848
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I 0.848
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N 0.848
Pavir.J04684 Panicum virgatum Pavir.J04684 I 0.848
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N 0.848
Sb01g038650 Sorghum bicolor Sb01g038650 N 0.848
GRMZM2G021095 Zea mays GRMZM2G021095 N 0.848
GRMZM2G165805 Zea mays GRMZM2G165805 N 0.848
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N 0.848
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.848
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.848
Bo8g112780 Brassica oleracea Bo8g112780 N 0.848
PGSC0003DMG400027372 Solanum tuberosum PGSC0003DMG400027372 I 0.846
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I 0.838
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N 0.838
Bra031599 Brassica rapa Bra031599 N 0.838
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.838
GRMZM2G145568 Zea mays GRMZM2G145568 N 0.838
BGIOSGA010952 Oryza indica BGIOSGA010952 N 0.828
OMERI03G12370 Oryza meridionalis OMERI03G12370 N 0.828
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N 0.828
OBART03G13260 Oryza barthii OBART03G13260 N 0.828
ONIVA03G14510 Oryza nivara ONIVA03G14510 N 0.828
BGIOSGA038947 Oryza indica BGIOSGA038947 N 0.828
OPUNC03G12790 Oryza punctata OPUNC03G12790 N 0.828
mgf019622m Mimulus guttatus mgf019622m N 0.828
Si024430m.g Setaria italica Si024430m.g N 0.828
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N 0.828
OS03G0287400 Oryza sativa OS03G0287400 N 0.828
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N 0.828
evm.TU.contig_40341.2 Carica papaya evm.TU.contig_40341.2 N 0.826
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N 0.818
Si037280m.g Setaria italica Si037280m.g N 0.818
OB03G23270 Oryza brachyantha OB03G23270 N 0.818
PDK_20s1595351g001 Phoenix dactylifera PDK_20s1595351g001 N 0.808
F775_02335 Aegilops tauschii F775_02335 N 0.808
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.808
OBART05G01640 Oryza barthii OBART05G01640 N 0.808
Traes_4BL_97EDABD02 Triticum aestivum Traes_4BL_97EDABD02 N 0.808
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.808
BGIOSGA018905 Oryza indica BGIOSGA018905 I 0.807
OS05G0123000 Oryza sativa OS05G0123000 I 0.807
ORUFI05G01750 Oryza rufipogon ORUFI05G01750 I 0.807
OMERI05G01740 Oryza meridionalis OMERI05G01740 N 0.804
OPUNC05G01610 Oryza punctata OPUNC05G01610 N 0.804
Cucsa.207390 Cucumis sativus Cucsa.207390 N 0.798
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N 0.798
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N 0.798
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N 0.798
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.798
MLOC_68570 Hordeum vulgare MLOC_68570 N 0.798
PK17019.1 Cannabis sativa PK17019.1 I 0.794
BRADI1G65760 Brachypodium distachyon BRADI1G65760 N 0.788
LPERR03G11720 Leersia perrieri LPERR03G11720 N 0.788
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N 0.788
OPUNC05G01600 Oryza punctata OPUNC05G01600 N 0.780
VIT_13s0019g03710 Vitis vinifera VIT_13s0019g03710 N 0.778
VIT_13s0019g03800 Vitis vinifera VIT_13s0019g03800 N 0.770
OGLUM05G01700 Oryza glumaepatula OGLUM05G01700 N 0.770
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.769
OLONG_017777 Oryza longistaminata OLONG_017777 N 0.769
GSMUA_Achr4G16790_001 Musa acuminata GSMUA_Achr4G16790_001 N 0.768
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.768
OMERI05G01730 Oryza meridionalis OMERI05G01730 N 0.767
VIT_13s0019g03760 Vitis vinifera VIT_13s0019g03760 N 0.758
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N 0.747
ONIVA05G01850 Oryza nivara ONIVA05G01850 I 0.747
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.747
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.747
cassava41200.m1 Manihot esculenta cassava41200.m1 N 0.739
VIT_13s0019g03810 Vitis vinifera VIT_13s0019g03810 N 0.737
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.737
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.737
PGSC0003DMG400025384 Solanum tuberosum PGSC0003DMG400025384 N 0.737
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.737
VIT_13s0019g03820 Vitis vinifera VIT_13s0019g03820 N 0.737
PK09808.1 Cannabis sativa PK09808.1 I 0.732
Cucsa.275710 Cucumis sativus Cucsa.275710 N 0.727
Cla013678 Citrullus lanatus Cla013678 I 0.727
Cucsa.358620 Cucumis sativus Cucsa.358620 N 0.727
VIT_13s0019g03840 Vitis vinifera VIT_13s0019g03840 N 0.727
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.727
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.727
PK11564.1 Cannabis sativa PK11564.1 I 0.727
Pm011040 Prunus mume Pm011040 I 0.727
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.727
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.727
MDP0000121203 Malus domestica MDP0000121203 I 0.727
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.727
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.727
30169.m006340 Ricinus communis 30169.m006340 I 0.727
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.727
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.727
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.727
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.727
VIT_13s0019g03780 Vitis vinifera VIT_13s0019g03780 N 0.727
MDP0000268890 Malus domestica MDP0000268890 I 0.727
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.727
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.727
MDP0000284409 Malus domestica MDP0000284409 I 0.727
TCM_032557 Theobroma cacao TCM_032557 I 0.727
LBD4 Arabidopsis thaliana AT1G31320 D 0.727
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.727
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.727
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.727
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.727
mgf026046m Mimulus guttatus mgf026046m I 0.727
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.727
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.727
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.727
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.727
MDP0000183071 Malus domestica MDP0000183071 N 0.725
SapurV1A.0094s0480 Salix purpurea SapurV1A.0094s0480 I 0.717
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.717
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I 0.717
PK24688.1 Cannabis sativa PK24688.1 I 0.717
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.717
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.717
POPTR_0003s14880 Populus trichocarpa POPTR_0003s14880 I 0.717
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.717
Ca_06548 Cicer arietinum Ca_06548 I 0.717
POPTR_0001s11610 Populus trichocarpa POPTR_0001s11610 I 0.717
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.717
Bra014907 Brassica rapa Bra014907 I 0.717
BRADI4G44850 Brachypodium distachyon BRADI4G44850 I 0.717
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.717
Ca_13575 Cicer arietinum Ca_13575 I 0.717
TCM_029315 Theobroma cacao TCM_029315 I 0.717
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I 0.717
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I 0.717
Gorai.011G051200 Gossypium raimondii Gorai.011G051200 I 0.717
cassava4159.m1 Manihot esculenta cassava4159.m1 N 0.712
Cucsa.011680 Cucumis sativus Cucsa.011680 N 0.711
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.707
GLYMA09G02510 Glycine max GLYMA09G02510 I 0.707
GSMUA_Achr9G04330_001 Musa acuminata GSMUA_Achr9G04330_001 N 0.707
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.707
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.707
MLOC_5148 Hordeum vulgare MLOC_5148 I 0.707
Bo7g041000 Brassica oleracea Bo7g041000 I 0.707
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.707
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.707
Lus10040638.g Linum usitatissimum Lus10040638.g I 0.707
TRIUR3_11082 Triticum urartu TRIUR3_11082 I 0.707
mgf022958m Mimulus guttatus mgf022958m I 0.707
mgf018189m Mimulus guttatus mgf018189m I 0.707
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.707
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.707
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.707
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.707
Eucgr.J00175 Eucalyptus grandis Eucgr.J00175 I 0.707
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I 0.707
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.702