GLYMA19G12650 (Glycine max)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 GLYMA19G12650 T245254_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.889 0.889
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA19G12650.3 LOB 26 124
GLYMA19G12650.4 LOB 10 108
GLYMA19G12650.5 LOB 10 108
GLYMA19G12650.6 LOB 10 108

Links

Other LOB family TFs
Other Glycine max TFs

180 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.990
Ca_24372 Cicer arietinum Ca_24372 I 0.980
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.980
Pm015649 Prunus mume Pm015649 I 0.970
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.970
PK26472.1 Cannabis sativa PK26472.1 I 0.970
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.970
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.970
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.960
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.960
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.960
29917.m001993 Ricinus communis 29917.m001993 I 0.960
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.960
MDP0000848210 Malus domestica MDP0000848210 I 0.960
TCM_016952 Theobroma cacao TCM_016952 I 0.949
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.949
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.949
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.949
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.949
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.939
Cla010600 Citrullus lanatus Cla010600 I 0.939
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.939
Cla017388 Citrullus lanatus Cla017388 I 0.939
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.929
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.929
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.929
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.929
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.919
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.919
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.919
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.919
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.919
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.909
TCM_012190 Theobroma cacao TCM_012190 I 0.899
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.899
MDP0000130659 Malus domestica MDP0000130659 I 0.899
MDP0000254288 Malus domestica MDP0000254288 I 0.899
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.899
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.899
30147.m013890 Ricinus communis 30147.m013890 I 0.899
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.899
Cla019510 Citrullus lanatus Cla019510 I 0.899
LOB Vitis vinifera VIT_17s0000g09010 I 0.899
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.899
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.899
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.899
Bo3g104760 Brassica oleracea Bo3g104760 I 0.889
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.889
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.889
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.889
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.889
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.889
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.889
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.889
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.889
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.889
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.889
LOB Arabidopsis lyrata scaffold_802995.1 I 0.889
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.889
Pm024312 Prunus mume Pm024312 I 0.889
LOB Arabidopsis thaliana AT5G63090 D 0.889
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.889
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.889
mgf024603m Mimulus guttatus mgf024603m I 0.889
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.889
Bra038606 Brassica rapa Bra038606 I 0.889
Ca_08824 Cicer arietinum Ca_08824 I 0.889
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.889
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.889
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.889
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.879
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.879
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.879
Bo9g017470 Brassica oleracea Bo9g017470 I 0.879
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.879
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.879
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.879
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.869
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.869
Bra035860 Brassica rapa Bra035860 I 0.869
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.869
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.869
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.869
PK21510.1 Cannabis sativa PK21510.1 I 0.869
Si002632m.g Setaria italica Si002632m.g I 0.869
Ca_07463 Cicer arietinum Ca_07463 I 0.869
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.869
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.869
OB01G14220 Oryza brachyantha OB01G14220 I 0.869
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.869
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.869
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.859
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.859
LBD25 Arabidopsis thaliana AT3G27650 I 0.859
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.859
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.859
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.859
OS01G0169400 Oryza sativa OS01G0169400 I 0.859
F775_25656 Aegilops tauschii F775_25656 I 0.859
OBART01G04470 Oryza barthii OBART01G04470 I 0.859
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.859
mgf016361m Mimulus guttatus mgf016361m I 0.848
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.848
mgf003146m Mimulus guttatus mgf003146m I 0.848
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.848
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.848
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.848
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.848
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.848
Bo7g085860 Brassica oleracea Bo7g085860 I 0.838
Bra025294 Brassica rapa Bra025294 I 0.838
Bra039072 Brassica rapa Bra039072 I 0.838
Bo9g008330 Brassica oleracea Bo9g008330 I 0.838
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.838
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.829
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.818
Cla003499 Citrullus lanatus Cla003499 I 0.818
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.818
Bra033019 Brassica rapa Bra033019 I 0.808
Bo2g144870 Brassica oleracea Bo2g144870 I 0.808
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.788
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.788
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.768
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.768
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.758
GLYMA01G32340 Glycine max GLYMA01G32340 N 0.758
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.747
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.747
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.747
TRIUR3_10339 Triticum urartu TRIUR3_10339 I 0.737
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.737
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.737
AS2 Vitis vinifera VIT_00s0340g00090 I 0.737
mgf014755m Mimulus guttatus mgf014755m I 0.737
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.727
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.727
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.727
MDP0000273432 Malus domestica MDP0000273432 I 0.727
Ca_20200 Cicer arietinum Ca_20200 I 0.727
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.727
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.727
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.727
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.727
Cla005851 Citrullus lanatus Cla005851 I 0.727
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.727
Bra039733 Brassica rapa Bra039733 I 0.717
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.717
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.717
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.717
MDP0000643326 Malus domestica MDP0000643326 I 0.717
LBD6 Arabidopsis thaliana AT1G65620 D 0.717
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.717
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.717
Bo2g051420 Brassica oleracea Bo2g051420 I 0.717
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.717
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.717
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.717
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.717
TCM_024217 Theobroma cacao TCM_024217 I 0.717
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.717
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.717
29929.m004500 Ricinus communis 29929.m004500 I 0.717
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.707
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.707
OB05G24560 Oryza brachyantha OB05G24560 I 0.707
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.707
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.707
OS05G0417000 Oryza sativa OS05G0417000 I 0.707
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.707
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.707
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.707
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.707
F775_21760 Aegilops tauschii F775_21760 I 0.707
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.707
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.707
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.707
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.707
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.707
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.707