GRMZM2G025989 (Zea mays)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 GRMZM2G025989 T245267_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN

NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.787 0.787
gw1.238.28.1
M02262_2.00
Physcomitrella patens
NNNNNVNGSN

NSCNBNNNNN
PBM
Weirauch et al.(2014)
pTH8459
0.787 0.787
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN

NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.713 0.713
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH

DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.713 0.713
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G025989_P01 LOB 10 103

Links

Other LOB family TFs
Other Zea mays TFs

394 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000013478 Ailuropoda melanoleuca ENSAMEG00000013478 I 0.000
SNAI1 Bos taurus ENSBTAG00000014554 I 0.000
ENSBTAP00000019345-D1 Bos grunniens ENSBTAP00000019345-D1 I 0.000
SNAI1 Canis familiaris ENSCAFG00000011499 I 0.000
SNAI1 Callithrix jacchus ENSCJAG00000000518 I 0.000
SNAI1 Cavia porcellus ENSCPOG00000026663 I 0.000
ENSCSAG00000015065 Chlorocebus sabaeus ENSCSAG00000015065 I 0.000
snai3 Danio rerio ENSDARG00000031243 I 0.000
SNAI1 Dasypus novemcinctus ENSDNOG00000023834 I 0.000
ENSETEG00000016371 Echinops telfairi ENSETEG00000016371 I 0.000
SNAI1 Felis catus ENSFCAG00000010558 I 0.000
SNAI1 Homo sapiens ENSG00000124216 D 0.000
SNAI1 Gorilla gorilla ENSGGOG00000024422 I 0.000
SNAI1 Loxodonta africana ENSLAFG00000030265 I 0.000
ENSMICG00000011160 Microcebus murinus ENSMICG00000011160 I 0.000
ENSMLUG00000015053 Myotis lucifugus ENSMLUG00000015053 I 0.000
ENSMMUG00000019719 Macaca mulatta ENSMMUG00000019719 I 0.000
ENSMPUG00000017558 Mustela putorius furo ENSMPUG00000017558 I 0.000
Snai1 Mus musculus ENSMUSG00000042821 D 0.000
ENSNLEG00000006985 Nomascus leucogenys ENSNLEG00000006985 I 0.000
ENSOARG00000013174 Ovis aries ENSOARG00000013174 I 0.000
SNAI1 Otolemur garnettii ENSOGAG00000030111 I 0.000
ENSPANG00000007536 Papio anubis ENSPANG00000007536 I 0.000
SNAI1 Procavia capensis ENSPCAG00000011934 I 0.000
SNAI1 Pan troglodytes ENSPTRG00000013614 I 0.000
SNAI1 Pteropus vampyrus ENSPVAG00000004119 I 0.000
Snai1 Rattus norvegicus ENSRNOG00000009594 I 0.000
ENSSTOG00000005866 Ictidomys tridecemlineatus ENSSTOG00000005866 I 0.000
SNAI1 Tupaia belangeri ENSTBEG00000012262 I 0.000
snai3 Takifugu rubripes ENSTRUG00000002385 I 0.000
SNAI1 Tursiops truncatus ENSTTRG00000002029 I 0.000
Myotis_brandtii_SNAI1_10026057 Myotis brandtii Myotis_brandtii_SNAI1_10026057 I 0.000
Myotis_brandtii_SNAI1_10026379 Myotis brandtii Myotis_brandtii_SNAI1_10026379 I 0.000
XP_002933720 Xenopus tropicalis XP_002933720 N 0.000