GRMZM2G025989 (Zea mays)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 GRMZM2G025989 T245267_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN

NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.787 0.787
gw1.238.28.1
M02262_2.00
Physcomitrella patens
NNNNNVNGSN

NSCNBNNNNN
PBM
Weirauch et al.(2014)
pTH8459
0.787 0.787
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN

NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.713 0.713
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH

DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.713 0.713
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G025989_P01 LOB 10 103

Links

Other LOB family TFs
Other Zea mays TFs

394 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AB00151.1 Alternaria brassicicola AB00151.1 N 0.000
COCC4DRAFT_67427 Bipolaris maydis COCC4DRAFT_67427 N 0.000
COCCADRAFT_36164 Bipolaris zeicola COCCADRAFT_36164 N 0.000
COCMIDRAFT_32035 Bipolaris oryzae COCMIDRAFT_32035 N 0.000
COCSADRAFT_213051 Bipolaris sorokiniana COCSADRAFT_213051 N 0.000
COCVIDRAFT_32445 Bipolaris victoriae COCVIDRAFT_32445 N 0.000
estExt_fgenesh1_pg.C_20529 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_20529 N 0.000
estExt_fgenesh3_kg.C_170019 Neurospora discreta estExt_fgenesh3_kg.C_170019 N 0.000
PTRG_10691 Pyrenophora triticirepentis PTRG_10691 N 0.000
PTT_05694 Pyrenophora teres PTT_05694 N 0.000
PV08_03594 Exophiala spinifera PV08_03594 N 0.000
SETTUDRAFT_162912 Setosphaeria turcica SETTUDRAFT_162912 N 0.000
TRIREDRAFT_120908 Trichoderma reesei TRIREDRAFT_120908 N 0.000
VDAG_09674 Verticillium dahliae VDAG_09674 N 0.000