GRMZM2G025989 (Zea mays)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 GRMZM2G025989 T245267_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN

NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.787 0.787
gw1.238.28.1
M02262_2.00
Physcomitrella patens
NNNNNVNGSN

NSCNBNNNNN
PBM
Weirauch et al.(2014)
pTH8459
0.787 0.787
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN

NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.713 0.713
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH

DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.713 0.713
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G025989_P01 LOB 10 103

Links

Other LOB family TFs
Other Zea mays TFs

394 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.000
AGL80 Arabidopsis thaliana AT5G48670 D 0.000
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.000
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.000
Bo9g078450 Brassica oleracea Bo9g078450 I 0.000
Bo2g104810 Brassica oleracea Bo2g104810 I 0.000
Bra018490 Brassica rapa Bra018490 I 0.000
Bra029469 Brassica rapa Bra029469 I 0.000
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.000
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.000
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.000
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.000
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.000
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.000
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.000
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.000
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.000
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.000
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.000
Ca_13275 Cicer arietinum Ca_13275 I 0.000
Ca_06495 Cicer arietinum Ca_06495 I 0.000
Cla005226 Citrullus lanatus Cla005226 I 0.000
Cla009163 Citrullus lanatus Cla009163 I 0.000
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.000
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.000
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.000
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.000
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.000
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.000
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.000
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.000
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.000
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.000
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.000
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.000
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.000
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.000
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.000
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.000
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.000
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.000
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.000
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.000
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.000
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.000
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.000
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.000
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.000
MDP0000925348 Malus domestica MDP0000925348 I 0.000
MDP0000846004 Malus domestica MDP0000846004 I 0.000
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.000
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.000
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.000
mgf026186m Mimulus guttatus mgf026186m I 0.000
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.000
AGL87 Populus trichocarpa POPTR_0013s11210 N 0.000
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.000
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.000
Pm004396 Prunus mume Pm004396 I 0.000
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.000
30199.m000879 Ricinus communis 30199.m000879 I 0.000
30128.m008984 Ricinus communis 30128.m008984 I 0.000
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.000
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.000
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.000
SapurV1A.0690s0130 Salix purpurea SapurV1A.0690s0130 N 0.000
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.000
TCM_025670 Theobroma cacao TCM_025670 I 0.000
TCM_026845 Theobroma cacao TCM_026845 I 0.000
TCM_042799 Theobroma cacao TCM_042799 I 0.000
TCM_042848 Theobroma cacao TCM_042848 N 0.000
TCM_026842 Theobroma cacao TCM_026842 I 0.000
TCM_025671 Theobroma cacao TCM_025671 I 0.000
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.000