GSMUA_Achr2G23130_001 (Musa acuminata)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 GSMUA_Achr2G23130_001 T245323_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.747 0.747
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr2P23130_001 LOB 11 89

Links

Other LOB family TFs
Other Musa acuminata TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA002306 Oryza indica BGIOSGA002306 I 0.918
GSMUA_Achr10G20760_001 Musa acuminata GSMUA_Achr10G20760_001 I 0.912
PK18922.1 Cannabis sativa PK18922.1 I 0.895
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.889
GSMUA_Achr7G23710_001 Musa acuminata GSMUA_Achr7G23710_001 I 0.783
OLONG_009404 Oryza longistaminata OLONG_009404 I 0.759
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.759
LOB Vitis vinifera VIT_17s0000g09010 I 0.759
30147.m013890 Ricinus communis 30147.m013890 I 0.759
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.759
GSMUA_Achr5G25770_001 Musa acuminata GSMUA_Achr5G25770_001 I 0.758
GSMUA_Achr11G26500_001 Musa acuminata GSMUA_Achr11G26500_001 I 0.758
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.756
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.747
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.747
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.747
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.747
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.747
OB01G14220 Oryza brachyantha OB01G14220 I 0.747
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.747
Si002632m.g Setaria italica Si002632m.g I 0.747
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.747
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.745
PK21617.1 Cannabis sativa PK21617.1 I 0.739
Ca_07463 Cicer arietinum Ca_07463 I 0.734
F775_25656 Aegilops tauschii F775_25656 I 0.734
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.734
Lus10001139.g Linum usitatissimum Lus10001139.g I 0.724
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.723
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.709
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.709
MDP0000848210 Malus domestica MDP0000848210 I 0.709
PK13228.1 Cannabis sativa PK13228.1 I 0.703