GSMUA_Achr3G27340_001 (Musa acuminata)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 GSMUA_Achr3G27340_001 T245329_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG

CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.838 0.838
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR

YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.838 0.838
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN

NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.838 0.838
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.727 0.727
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr3P27340_001 LOB 8 107

Links

Other LOB family TFs
Other Musa acuminata TFs

215 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.879
Pm020629 Prunus mume Pm020629 I 0.879
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.869
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.869
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.869
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.869
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.869
MDP0000145761 Malus domestica MDP0000145761 I 0.859
TCM_004106 Theobroma cacao TCM_004106 I 0.859
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.859
29883.m002035 Ricinus communis 29883.m002035 I 0.859
MDP0000131964 Malus domestica MDP0000131964 I 0.859
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.859
mgf026090m Mimulus guttatus mgf026090m I 0.849
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.848
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.848
Bra016877 Brassica rapa Bra016877 I 0.848
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.848
Bo4g016000 Brassica oleracea Bo4g016000 I 0.848
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.848
Bra004693 Brassica rapa Bra004693 I 0.848
Bo4g191530 Brassica oleracea Bo4g191530 I 0.848
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.848
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.848
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.838
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.838
Solyc09g066260.2 Solanum lycopersicum Solyc09g066260.2 I 0.838
Ca_12213 Cicer arietinum Ca_12213 I 0.838
Cla006088 Citrullus lanatus Cla006088 I 0.838
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.838
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.838
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.838
LBD16 Arabidopsis thaliana AT2G42430 D 0.838
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.838
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.828
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.828
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.828
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.828
PGSC0003DMG400009713 Solanum tuberosum PGSC0003DMG400009713 I 0.828
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.828
Bo3g036030 Brassica oleracea Bo3g036030 I 0.828
Bra000257 Brassica rapa Bra000257 I 0.828
Aquca_017_00683 Aquilegia coerulea Aquca_017_00683 I 0.818
Gorai.004G219900 Gossypium raimondii Gorai.004G219900 I 0.808
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.798
Lus10024877.g Linum usitatissimum Lus10024877.g I 0.798
MTR_1g070220 Medicago truncatula MTR_1g070220 I 0.798
chr5.CM0494.160.nd Lotus japonicus chr5.CM0494.160.nd I 0.789
Solyc06g083930.1 Solanum lycopersicum Solyc06g083930.1 I 0.788
Bo3g036000 Brassica oleracea Bo3g036000 I 0.785
Eucgr.K03284 Eucalyptus grandis Eucgr.K03284 I 0.778
GLYMA13G18191 Glycine max GLYMA13G18191 I 0.778
GSMUA_Achr1G01350_001 Musa acuminata GSMUA_Achr1G01350_001 I 0.768
PGSC0003DMG400020069 Solanum tuberosum PGSC0003DMG400020069 I 0.768
PK23380.1 Cannabis sativa PK23380.1 I 0.761
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.758
OB02G44330 Oryza brachyantha OB02G44330 I 0.758
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.758
Lus10033872.g Linum usitatissimum Lus10033872.g I 0.758
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I 0.758
Pavir.J39638 Panicum virgatum Pavir.J39638 I 0.758
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.756
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.747
OS02G0820500 Oryza sativa OS02G0820500 I 0.747
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.747
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.747
Cagra.0686s0035 Capsella grandiflora Cagra.0686s0035 I 0.747
Carubv10018619m.g Capsella rubella Carubv10018619m.g I 0.747
Si019578m.g Setaria italica Si019578m.g I 0.747
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.747
Lus10000707.g Linum usitatissimum Lus10000707.g I 0.747
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.747
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.747
POPTR_0047s00280 Populus trichocarpa POPTR_0047s00280 I 0.744
TCM_005496 Theobroma cacao TCM_005496 I 0.739
OPUNC02G34750 Oryza punctata OPUNC02G34750 I 0.737
Pm020627 Prunus mume Pm020627 I 0.737
LjT35F15.70.nd Lotus japonicus LjT35F15.70.nd I 0.737
PRUPE_ppa019939mg Prunus persica PRUPE_ppa019939mg I 0.737
Bra040311 Brassica rapa Bra040311 I 0.737
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.737
gene08254-v1.0-hybrid Fragaria vesca gene08254-v1.0-hybrid I 0.737
Thhalv10006423m.g Eutrema salsugineum Thhalv10006423m.g I 0.737
Bra001087 Brassica rapa Bra001087 I 0.735
MDP0000254224 Malus domestica MDP0000254224 I 0.728
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.727
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.727
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.727
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.727
Bo4g195520 Brassica oleracea Bo4g195520 I 0.727
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.727
GSMUA_Achr5G13230_001 Musa acuminata GSMUA_Achr5G13230_001 I 0.727
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.727
Bo4g024620 Brassica oleracea Bo4g024620 I 0.727
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.727
Traes_6AL_D6045E37C Triticum aestivum Traes_6AL_D6045E37C I 0.727
Traes_6DL_850266B2A Triticum aestivum Traes_6DL_850266B2A I 0.727
TRIUR3_01477 Triticum urartu TRIUR3_01477 I 0.727
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.727
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.727
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.727
OBART03G10450 Oryza barthii OBART03G10450 I 0.727
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.727
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.727
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.727
OS03G0246900 Oryza sativa OS03G0246900 I 0.727
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.727
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.727
Lus10014757.g Linum usitatissimum Lus10014757.g I 0.727
Gorai.001G251700 Gossypium raimondii Gorai.001G251700 I 0.727
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.727
LBD18 Arabidopsis thaliana AT2G45420 D 0.727
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.727
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.727
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.727
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.724
OBART02G37570 Oryza barthii OBART02G37570 I 0.724
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.723
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.722
mgf020773m Mimulus guttatus mgf020773m I 0.717
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.717
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.717
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.717
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.717
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.717
Lus10000613.g Linum usitatissimum Lus10000613.g I 0.717
evm.TU.supercontig_50.42 Carica papaya evm.TU.supercontig_50.42 I 0.717
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.717
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.717
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.717
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.717
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.717
MTR_7g096610 Medicago truncatula MTR_7g096610 I 0.717
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.717
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.717
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.717
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.717
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.717
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.717
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.717
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.717
OS03G0149100 Oryza sativa OS03G0149100 I 0.717
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.717
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.717
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.717
Sb01g047000 Sorghum bicolor Sb01g047000 I 0.717
Si040019m.g Setaria italica Si040019m.g I 0.717
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.717
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.717
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.717
30174.m008898 Ricinus communis 30174.m008898 I 0.717
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.717
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.717
OBART03G03830 Oryza barthii OBART03G03830 I 0.717
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.717
Bra004910 Brassica rapa Bra004910 I 0.717
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.717
28428.m000040 Ricinus communis 28428.m000040 I 0.717
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.717
Pm020628 Prunus mume Pm020628 I 0.717
OB03G13890 Oryza brachyantha OB03G13890 I 0.717
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.717
Pm017936 Prunus mume Pm017936 I 0.717
Cla007068 Citrullus lanatus Cla007068 I 0.717
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.713
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.708
Bo1g153580 Brassica oleracea Bo1g153580 I 0.707
Lus10033873.g Linum usitatissimum Lus10033873.g I 0.707
MTR_1g070205 Medicago truncatula MTR_1g070205 I 0.707
Pavir.Ib00282 Panicum virgatum Pavir.Ib00282 I 0.707
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.707
F775_02052 Aegilops tauschii F775_02052 I 0.707
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.707
Bra036436 Brassica rapa Bra036436 I 0.707
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.707
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.707
GRMZM2G092483 Zea mays GRMZM2G092483 I 0.707
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.707
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.707
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.707
GSMUA_Achr1G06580_001 Musa acuminata GSMUA_Achr1G06580_001 I 0.707
orange1.1g027399m.g Citrus sinensis orange1.1g027399m.g I 0.707
gene08253-v1.0-hybrid Fragaria vesca gene08253-v1.0-hybrid I 0.707
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.707
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.707
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.707
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.707
Solyc09g066270.2 Solanum lycopersicum Solyc09g066270.2 I 0.707
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.707
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.707
cassava40664.m1 Manihot esculenta cassava40664.m1 I 0.707
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.707
cassava41632.m1 Manihot esculenta cassava41632.m1 I 0.707
30072.m000955 Ricinus communis 30072.m000955 I 0.707
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.707
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.707
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.707
Gorai.004G073200 Gossypium raimondii Gorai.004G073200 I 0.707
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.707
Gorai.004G073300 Gossypium raimondii Gorai.004G073300 I 0.707
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.707
LBD20 Arabidopsis thaliana AT3G03760 I 0.707
chr1.LjT38H23.30.nd Lotus japonicus chr1.LjT38H23.30.nd I 0.707
PGSC0003DMG400009716 Solanum tuberosum PGSC0003DMG400009716 I 0.707
Si037727m.g Setaria italica Si037727m.g I 0.707
Ciclev10023341m.g Citrus clementina Ciclev10023341m.g I 0.707
PRUPE_ppa025889mg Prunus persica PRUPE_ppa025889mg I 0.707
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.707
Gorai.007G144500 Gossypium raimondii Gorai.007G144500 I 0.707
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.707
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.705
ORUFI03G03540 Oryza rufipogon ORUFI03G03540 I 0.700
ONIVA03G03570 Oryza nivara ONIVA03G03570 I 0.700
OGLUM03G03700 Oryza glumaepatula OGLUM03G03700 I 0.700
OBART03G03820 Oryza barthii OBART03G03820 I 0.700