GSMUA_Achr4G28810_001 (Musa acuminata)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 GSMUA_Achr4G28810_001 T245339_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.737 0.737
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr4P28810_001 LOB 17 117

Links

Other LOB family TFs
Other Musa acuminata TFs

89 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30174.m008898 Ricinus communis 30174.m008898 I 0.788
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.747
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.717
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.778
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.717
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.788
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.717
Bo4g024620 Brassica oleracea Bo4g024620 I 0.737
Bo4g195520 Brassica oleracea Bo4g195520 I 0.717
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.737
Bra004910 Brassica rapa Bra004910 I 0.737
Bra040311 Brassica rapa Bra040311 I 0.727
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.798
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.737
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.737
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.737
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.778
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.707
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.788
Ca_20428 Cicer arietinum Ca_20428 I 0.737
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.788
Cla007068 Citrullus lanatus Cla007068 I 0.768
Cla007069 Citrullus lanatus Cla007069 I 0.727
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.768
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.778
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.737
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.747
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.717
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.707
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.747
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.768
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.778
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.778
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.727
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.788
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.788
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.778
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.778
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.788
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.768
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.717
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.717
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.707
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.737
LBD18 Arabidopsis thaliana AT2G45420 D 0.737
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.778
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.737
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.788
MDP0000429067 Malus domestica MDP0000429067 I 0.707
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.788
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.707
OB10G12360 Oryza brachyantha OB10G12360 I 0.717
OBART03G10450 Oryza barthii OBART03G10450 I 0.788
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.788
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.717
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.707
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.788
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.717
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.788
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.717
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.788
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.788
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.717
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.788
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.717
OS03G0246900 Oryza sativa OS03G0246900 I 0.788
OS10G0162600 Oryza sativa OS10G0162600 I 0.717
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.758
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.747
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.737
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.788
PK23185.1 Cannabis sativa PK23185.1 I 0.717
PK25573.1 Cannabis sativa PK25573.1 I 0.717
Pm017935 Prunus mume Pm017935 I 0.707
Pm017936 Prunus mume Pm017936 I 0.778
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.707
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.778
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.717
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.768
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.727
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.778
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.788
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.758
TCM_005497 Theobroma cacao TCM_005497 I 0.707
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.737
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.788
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.778
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.788
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.707