GSMUA_Achr7G23710_001 (Musa acuminata)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 GSMUA_Achr7G23710_001 T245358_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN

NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.833 0.833
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH

DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.733 0.733
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr7P23710_001 LOB 16 75

Links

Other LOB family TFs
Other Musa acuminata TFs

92 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.900
F775_21760 Aegilops tauschii F775_21760 I 0.900
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.883
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.883
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.883
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.883
OB01G48740 Oryza brachyantha OB01G48740 I 0.883
OBART01G39990 Oryza barthii OBART01G39990 I 0.883
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.883
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.883
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.883
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.883
LBD6 Oryza sativa OS01G0889400 I 0.883
LBD6 Oryza indica BGIOSGA004955 I 0.883
PK18922.1 Cannabis sativa PK18922.1 I 0.877
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.870
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.867
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.867
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.867
Si002599m.g Setaria italica Si002599m.g I 0.867
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.867
GSMUA_Achr5G25770_001 Musa acuminata GSMUA_Achr5G25770_001 I 0.864
GSMUA_Achr11G26500_001 Musa acuminata GSMUA_Achr11G26500_001 I 0.864
Pavir.J03238 Panicum virgatum Pavir.J03238 I 0.850
Cla005851 Citrullus lanatus Cla005851 I 0.833
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.833
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.833
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.833
MDP0000643326 Malus domestica MDP0000643326 I 0.817
Ca_20200 Cicer arietinum Ca_20200 I 0.800
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.800
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.800
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.800
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.800
BGIOSGA002306 Oryza indica BGIOSGA002306 I 0.787
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.783
Si002632m.g Setaria italica Si002632m.g I 0.783
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.783
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.783
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.783
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.783
OB01G14220 Oryza brachyantha OB01G14220 I 0.783
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.783
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.783
F775_25656 Aegilops tauschii F775_25656 I 0.783
GSMUA_Achr2G23130_001 Musa acuminata GSMUA_Achr2G23130_001 I 0.783
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.783
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.783
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.769
Ca_24372 Cicer arietinum Ca_24372 I 0.767
MDP0000848210 Malus domestica MDP0000848210 I 0.767
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.767
Solyc02g065150.1 Solanum lycopersicum Solyc02g065150.1 I 0.767
PGSC0003DMG402000764 Solanum tuberosum PGSC0003DMG402000764 I 0.767
TCM_000560 Theobroma cacao TCM_000560 I 0.767
Cla020438 Citrullus lanatus Cla020438 I 0.750
30147.m013890 Ricinus communis 30147.m013890 I 0.750
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.750
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.750
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.750
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.750
LOB Vitis vinifera VIT_17s0000g09010 I 0.750
GRMZM2G096064 Zea mays GRMZM2G096064 I 0.750
PRUPE_ppa015145mg Prunus persica PRUPE_ppa015145mg I 0.750
PGSC0003DMG401000764 Solanum tuberosum PGSC0003DMG401000764 I 0.750
LPERR03G21590 Leersia perrieri LPERR03G21590 I 0.750
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.750
chr2.LjT16G06.10.nd Lotus japonicus chr2.LjT16G06.10.nd I 0.733
Cla010600 Citrullus lanatus Cla010600 I 0.733
MDP0000777060 Malus domestica MDP0000777060 I 0.733
Ca_07463 Cicer arietinum Ca_07463 I 0.733
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.733
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.733
Si036905m.g Setaria italica Si036905m.g I 0.733
mgf004296m Mimulus guttatus mgf004296m I 0.733
mgf003146m Mimulus guttatus mgf003146m I 0.733
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.733
LBD25 Arabidopsis thaliana AT3G27650 I 0.733
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.723
GSMUA_Achr3G21730_001 Musa acuminata GSMUA_Achr3G21730_001 N 0.722
GRMZM2G154320 Zea mays GRMZM2G154320 N 0.717
PK13228.1 Cannabis sativa PK13228.1 I 0.717
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.717
Bra033019 Brassica rapa Bra033019 I 0.717
Bra032153 Brassica rapa Bra032153 I 0.717
Bo4g151770 Brassica oleracea Bo4g151770 I 0.717
Ca_02125 Cicer arietinum Ca_02125 I 0.717
Bo2g144870 Brassica oleracea Bo2g144870 I 0.717
Ca_02124 Cicer arietinum Ca_02124 I 0.700
SapurV1A.0811s0010 Salix purpurea SapurV1A.0811s0010 I 0.700
mgf024603m Mimulus guttatus mgf024603m I 0.700
BRADI1G14677 Brachypodium distachyon BRADI1G14677 N 0.700