MLOC_52276 (Hordeum vulgare)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 MLOC_52276 T245423_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.729 0.729
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.729 0.729
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.729 0.729
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.707 0.707
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.709 0.709
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MLOC_52276.1 LOB 27 123
MLOC_52276.3 LOB 29 125
MLOC_52276.4 LOB 27 113
MLOC_52276.5 LOB 27 123
MLOC_52276.6 LOB 29 115
MLOC_52276.7 LOB 29 128

Links

Other LOB family TFs
Other Hordeum vulgare TFs

Invalid Input OrderBy

352 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action