MTR_3g094690 (Medicago truncatula)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 MTR_3g094690 T245447_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD13
M06956_2.00
Arabidopsis thaliana
YGSCGDNDDHNVCGGHG

CDCCGBNDHHNHCGSCR
Dap-seq
OMalley et al.(2016)
LBD13_col_a
0.816 0.816
LBD13
M06957_2.00
Arabidopsis thaliana
CGSCGNNDDWNNCGG

CCGNNWHHNNCGSCG
Dap-seq
OMalley et al.(2016)
LBD13_colamp_a
0.818 0.818
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES72715 LOB 47 145
KEH35575 LOB 47 144

Links

Other LOB family TFs
Other Medicago truncatula TFs

163 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.960
Ca_04126 Cicer arietinum Ca_04126 I 0.960
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.960
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.949
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.949
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.949
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.939
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.939
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.939
TCM_045438 Theobroma cacao TCM_045438 I 0.939
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.939
PK21617.1 Cannabis sativa PK21617.1 I 0.935
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.929
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.929
PK17217.1 Cannabis sativa PK17217.1 I 0.929
MDP0000278334 Malus domestica MDP0000278334 I 0.929
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.919
29729.m002335 Ricinus communis 29729.m002335 I 0.919
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.919
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.919
LBD15 Arabidopsis thaliana AT2G40470 I 0.909
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.909
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.909
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.909
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.909
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.909
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.909
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.909
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.909
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.899
Bo4g190210 Brassica oleracea Bo4g190210 I 0.899
Bo4g012620 Brassica oleracea Bo4g012620 I 0.899
Bo3g034980 Brassica oleracea Bo3g034980 I 0.899
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.899
Bra000188 Brassica rapa Bra000188 I 0.899
Bra004572 Brassica rapa Bra004572 I 0.899
Cla007391 Citrullus lanatus Cla007391 I 0.899
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.899
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.899
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.899
Ca_12420 Cicer arietinum Ca_12420 I 0.899
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.889
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.889
OB05G14280 Oryza brachyantha OB05G14280 I 0.885
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.879
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.879
Bra016992 Brassica rapa Bra016992 I 0.879
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.879
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.869
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.869
TCM_042262 Theobroma cacao TCM_042262 I 0.869
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.863
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.859
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.859
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.859
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.859
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.859
mgf011471m Mimulus guttatus mgf011471m I 0.859
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.859
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.859
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.859
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.859
Pm000277 Prunus mume Pm000277 I 0.848
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.848
Ca_15642 Cicer arietinum Ca_15642 I 0.848
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.848
mgf020556m Mimulus guttatus mgf020556m I 0.848
29957.m001411 Ricinus communis 29957.m001411 I 0.848
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.848
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.848
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.848
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.848
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.848
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.848
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.838
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.838
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.838
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.838
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.838
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.838
OS05G0165450 Oryza sativa OS05G0165450 I 0.838
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.838
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.838
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.838
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.838
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.838
Si012018m.g Setaria italica Si012018m.g I 0.838
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.838
Si004575m.g Setaria italica Si004575m.g I 0.838
OBART05G04570 Oryza barthii OBART05G04570 I 0.838
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.828
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.828
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.828
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.828
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.828
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.828
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.828
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.828
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.828
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.828
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.828
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.828
OS01G0825000 Oryza sativa OS01G0825000 I 0.828
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.828
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.828
OBART01G35680 Oryza barthii OBART01G35680 I 0.828
OB01G44400 Oryza brachyantha OB01G44400 I 0.828
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.828
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.828
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.824
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.818
LBD13 Arabidopsis thaliana AT2G30340 D 0.818
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.818
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.818
Bo4g172950 Brassica oleracea Bo4g172950 I 0.818
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.818
Bo4g059520 Brassica oleracea Bo4g059520 I 0.818
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.818
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.818
Bra018320 Brassica rapa Bra018320 I 0.818
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.818
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.818
F775_25790 Aegilops tauschii F775_25790 I 0.818
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.818
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.818
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.818
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.818
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.818
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.818
F775_52636 Aegilops tauschii F775_52636 I 0.818
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.818
Bra021627 Brassica rapa Bra021627 I 0.818
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.818
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.818
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.808
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.808
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.798
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.798
PK03716.1 Cannabis sativa PK03716.1 I 0.794
Bo4g190140 Brassica oleracea Bo4g190140 I 0.789
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.747
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.727
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.727
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.717
TCM_032557 Theobroma cacao TCM_032557 I 0.717
Si026864m.g Setaria italica Si026864m.g I 0.717
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.714
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.714
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.712
30169.m006340 Ricinus communis 30169.m006340 I 0.707
Si037583m.g Setaria italica Si037583m.g I 0.707
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.707
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.707
mgf026046m Mimulus guttatus mgf026046m I 0.707
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.707
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.707
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.707
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.707
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.707
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.707
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.707
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.704