MTR_5g075020 (Medicago truncatula)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 MTR_5g075020 T245458_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD13
M06956_2.00
Arabidopsis thaliana
YGSCGDNDDHNVCGGHG

CDCCGBNDHHNHCGSCR
Dap-seq
OMalley et al.(2016)
LBD13_col_a
0.859 0.859
LBD13
M06957_2.00
Arabidopsis thaliana
CGSCGNNDDWNNCGG

CCGNNWHHNNCGSCG
Dap-seq
OMalley et al.(2016)
LBD13_colamp_a
0.859 0.859
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN

NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES98957 LOB 47 145
AES98958 LOB 43 141

Links

Other LOB family TFs
Other Medicago truncatula TFs

195 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.961
PK21617.1 Cannabis sativa PK21617.1 I 0.957
Ca_15642 Cicer arietinum Ca_15642 I 0.939
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.919
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.919
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.919
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.909
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.909
TCM_042262 Theobroma cacao TCM_042262 I 0.899
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.899
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.899
TCM_045438 Theobroma cacao TCM_045438 I 0.899
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.899
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.899
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.899
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.899
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.899
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.899
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.899
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.899
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.889
PK17217.1 Cannabis sativa PK17217.1 I 0.889
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.889
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.889
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.889
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.889
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.889
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.889
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.889
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.889
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.889
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.879
MDP0000278334 Malus domestica MDP0000278334 I 0.879
29729.m002335 Ricinus communis 29729.m002335 I 0.879
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.879
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.879
Pm000277 Prunus mume Pm000277 I 0.879
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.879
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.879
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.879
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.879
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.879
29957.m001411 Ricinus communis 29957.m001411 I 0.879
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.879
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.879
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.879
Bra004572 Brassica rapa Bra004572 I 0.879
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.879
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.879
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.879
Bo4g012620 Brassica oleracea Bo4g012620 I 0.879
mgf011471m Mimulus guttatus mgf011471m I 0.879
LBD15 Arabidopsis thaliana AT2G40470 I 0.879
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.879
OB05G14280 Oryza brachyantha OB05G14280 I 0.874
Bra000188 Brassica rapa Bra000188 I 0.869
Bra021627 Brassica rapa Bra021627 I 0.869
Bo4g190210 Brassica oleracea Bo4g190210 I 0.869
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.869
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.869
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.869
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.869
Bo4g172950 Brassica oleracea Bo4g172950 I 0.869
Bo3g034980 Brassica oleracea Bo3g034980 I 0.869
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.869
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.869
Ca_04126 Cicer arietinum Ca_04126 I 0.869
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.869
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.869
Si012018m.g Setaria italica Si012018m.g I 0.859
Si004575m.g Setaria italica Si004575m.g I 0.859
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.859
Bo4g059520 Brassica oleracea Bo4g059520 I 0.859
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.859
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.859
LBD13 Arabidopsis thaliana AT2G30340 D 0.859
OB01G44400 Oryza brachyantha OB01G44400 I 0.859
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.859
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.859
Ca_12420 Cicer arietinum Ca_12420 I 0.859
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.859
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.859
F775_25790 Aegilops tauschii F775_25790 I 0.859
Bra018320 Brassica rapa Bra018320 I 0.859
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.859
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.859
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.859
PK03716.1 Cannabis sativa PK03716.1 I 0.853
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.849
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.848
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.848
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.848
Cla007391 Citrullus lanatus Cla007391 I 0.848
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.848
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.848
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.848
OBART05G04570 Oryza barthii OBART05G04570 I 0.848
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.848
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.848
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.848
OBART01G35680 Oryza barthii OBART01G35680 I 0.848
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.848
Bra016992 Brassica rapa Bra016992 I 0.848
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.848
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.848
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.848
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.848
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.848
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.848
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.848
OS01G0825000 Oryza sativa OS01G0825000 I 0.848
OS05G0165450 Oryza sativa OS05G0165450 I 0.848
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.848
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.848
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.848
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.848
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.848
MDP0000167580 Malus domestica MDP0000167580 I 0.840
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.838
mgf020556m Mimulus guttatus mgf020556m I 0.838
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.838
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.838
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.838
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.838
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.838
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.838
Pm019028 Prunus mume Pm019028 I 0.836
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.828
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.828
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.828
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.828
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.828
F775_52636 Aegilops tauschii F775_52636 I 0.828
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.828
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.821
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.818
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.818
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.818
PK05388.1 Cannabis sativa PK05388.1 I 0.810
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.808
Bo4g190140 Brassica oleracea Bo4g190140 I 0.789
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.787
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.768
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.768
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.747
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.746
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.737
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.727
mgf026046m Mimulus guttatus mgf026046m I 0.727
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.727
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.727
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.717
Si037583m.g Setaria italica Si037583m.g I 0.717
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.717
30169.m006340 Ricinus communis 30169.m006340 I 0.717
TCM_032557 Theobroma cacao TCM_032557 I 0.717
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.717
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.717
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.717
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.717
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.717
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.717
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N 0.712
Cla006731 Citrullus lanatus Cla006731 I 0.709
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.707
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.707
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.707
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.707
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.707
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.707
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.707
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.707
LBD4 Arabidopsis thaliana AT1G31320 D 0.707
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.707
MDP0000121203 Malus domestica MDP0000121203 I 0.707
Ca_13575 Cicer arietinum Ca_13575 I 0.707
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.707
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.707
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.707
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.707
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.707
MDP0000284409 Malus domestica MDP0000284409 I 0.707
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.707
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.707
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.707
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.707
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.707
Pm011040 Prunus mume Pm011040 I 0.707
MDP0000268890 Malus domestica MDP0000268890 I 0.707
PK17019.1 Cannabis sativa PK17019.1 I 0.706
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.704
PK29334.1 Cannabis sativa PK29334.1 I 0.703
PK18922.1 Cannabis sativa PK18922.1 I 0.702
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.702